RetrogeneDB ID:
retro_ecab_734
Organism:
Horse ( Equus_caballus )
Location:
3:107566486-107566926 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.57 %
Coverage:
69.52 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
HPRT1
Parental gene aliases:
No gene alias available
Parental gene description:
hypoxanthine phosphoribosyltransferase 1 [Source:HGNC Symbol;Acc:5157]

Genomic region (view in browser)





>retro_ecab_734
AAATTCTCTGCTGACTTGCTGGATTACACCAAAGCCCTGAACAGAAATAGTGATATATCC
ATCCCATGACTGCAGATTTTATCAGACTGAAGAGCTACCTTAATGACCATTCAATTGGGA
CCATAAACGTAATTTATGGAGATGATTTTGCAACTTTAACTGGAAAGAATGTCTTGATTA
CTAAAGATATAATTGACATCAGCAAAATAATGCAAATCTTGCTTTCCTTAGTCAAGCAGT
ATAATCCAAAGATGGTCAGCATTGGAAGTTTGCTGTGAAAGAGATCCCCCCACTGAACTA
TTGGATGTAGGACAGATTGTGTTGGATTTGAAATTCCAGACCAATTTGTTATAGGATGTG
CCCTTGACTATAACTAATACATCAAGGATATCACTCATGTTTGTCTCATTAGCAAAACTG
GAAAAGCAAAATACAAAGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KFFADLLDYIKVLNRNSDRSIP-MTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKVCIFPQDIIDTGKTMQTLLSLVKEYNPKMVKVASLLVKRTPR-
KF.ADLLDY.K.LNRNSD.SIP.MT.DFIRLKSY.ND.S.G.I.VI.GDD..TLTGK......DIID..K.MQ.LLSLVK.YNPKMV...SLL.KR.P..
Retrocopy
KFSADLLDYTKALNRNSDISIP/MTADFIRLKSYLNDHSIGTINVIYGDDFATLTGKNVLITKDIIDISKIMQILLSLVKQYNPKMVSIGSLL*KRSPH*


Parental protein
SVGYRPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKEKYKA
..G.R.D.VGFEIPD.FV.G.ALDYN.Y..D..HVC.IS.TGK.KYKA
Retrocopy
TIGCRTDCVGFEIPDQFVIGCALDYN*YIKDITHVCLISKTGKAKYKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide