RetrogeneDB ID:
retro_ecab_735
Organism:
Horse ( Equus_caballus )
Location:
3:117718399-117718657 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.56 %
Coverage:
93.48 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_735
AAGGTTGGAATTGTCAGTAAATACTGGACCCGTTATGGTACCTCCCTCAGGAAAATGGTG
AAGAAAATTGAAATCAGCCAGCACGCCAGGAAGACTTGCTCCTTCTGTGGCAAAACCAAG
ATGAAGAGATGAGCTGTGGGGATCTGGCACTGTGGTTCCTCTGTAAAACTGGCAGCCGGT
GGTGCCTGGACCGACACCATCACTTCTGCTGTCACAGTAAAGTTGGCCATCAAAAGACTG
AAGGAATTGAAAGATCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.1
SRP021940_embryo 0.46
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
KVGIV.KY.TRYG.SLRKMVKKIEISQHA..TCSFCGKTKMKR.AVGIWHCGS..K..AGGAWT...TSAVTVK.AI.RLKELKDQ
Retrocopy
KVGIVSKYWTRYGTSLRKMVKKIEISQHARKTCSFCGKTKMKR*AVGIWHCGSSVKLAAGGAWTDTITSAVTVKLAIKRLKELKDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide