RetrogeneDB ID:
retro_ecab_736
Organism:
Horse ( Equus_caballus )
Location:
3:10883951-10884368 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.83 %
Coverage:
51.3 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_736
GAAGCTTTGGGAAAAGTTAATTGGTTCAATGTAAGAAATAGATGTGATTTCATGAACAGG
AATGACATCAAGCTACATGTATTTGTACACCAGACTGCCACAAACAAGAACAACCCAGGA
AGTGCCTCCACAGTGTAGGAGATGGAGAGACTGTGGAGGTTGATGTTGTTGAAGGAGCAA
AGGACTCAGAGGCAGCAAATGCTACAGGCCCAGGTGGAGTTCCAGCACAAGGCAGTCACG
ATGCAGCAGACTAACCATGATGGAGGCACCTCTACCCACCTCGCAGGGGTCCTCCACGCA
ATTGCCAGCAGGATTACCAGAATAGTGAGTGAAGTGGGTAAGAATGAGGGATAAGAGAAT
GCTCCCAAAGGCCAGGTCCCATCTTAACTACCTGCAGAAACTCTGAGGGTGTCACCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP-RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR-YPRRRGPP
..LG.V.WFNVRN...F.NRND.K..VFVHQTA..KNNP.RK.L.SVGDGETVE.DVVEG.K..EAAN.TGPGGVP.QGS..AAD....R..YP.RRGPP
Retrocopy
EALGKVNWFNVRNRCDFMNRNDIKLHVFVHQTATNKNNP/RKCLHSVGDGETVEVDVVEGAKDSEAANATGPGGVPAQGSHDAAD*P*WRHLYPPRRGPP


Parental protein
RNYQQNYQNSE-SGEKNEGSESAPEGQAQQRRPYRRRRFPP
RN.QQ.YQNSE....KNEG.E.AP.GQ.....P....R..P
Retrocopy
RNCQQDYQNSE\EVGKNEG*ENAPKGQVPS*LPAETLRVSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide