RetrogeneDB ID:
retro_ecab_741
Organism:
Horse ( Equus_caballus )
Location:
3:61406524-61406796 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.0 %
Coverage:
98.91 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_741
GCTAAATGTGCCAAGAAGATCAGAATTCTCTGTAAATATGGAACATGTCGTGGTGCCTCC
CACAGGAAAATGGTGAAGAAAATTGAAATCAGCCAGCATGCCAAGTACACTTGCTCCTTC
TGTGGCACAACCAGGATGAAGAGACGAGCTGTGGGAATCTGGCACTGTGGTTCCTGCATA
AAAATGGCGGCCAGTGATGCCTGGAGCTAAACACCACTTCTGCCATCATAGTAAAGTCCG
AAATCAGAAGACTGAAGGAATCAAAAGACCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT-YNTTSAVTVKSAIRRLKELKDQ
AK..KK..I..KYGT..GAS.RKMVKKIEISQHAKYTCSFCG.T.MKRRAVGIWHCGSC.K..A..AW...NTTSA..VKS.IRRLKE.KDQ
Retrocopy
AKCAKKIRILCKYGTCRGASHRKMVKKIEISQHAKYTCSFCGTTRMKRRAVGIWHCGSCIKMAASDAWS/LNTTSAIIVKSEIRRLKESKDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide