RetrogeneDB ID:
retro_ecab_742
Organism:
Horse ( Equus_caballus )
Location:
3:68949404-68949781 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
58.78 %
Coverage:
62.31 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_742
AACTTGAGGAAGGAGCTGGAATTACAAGTAAAAGAAGCTAATAGAGCTCATAATTACATC
AAGGTAAAAAGACCTTCTCCAAGGCATATAGCAATAAAACCGGCAAAAGTCAAAGATAAA
GCAAAAATATCAAGGGTGGCAAGGCAGAAGAAAATAACTTACAAAGTTATTTTACAAAGT
TATCAGGATTTCAGTGTCTTTCTCAGCAGAAACCTTACAGGTTAGGAGAGAGTGGAATGA
TACATTCAAAATTCTGAAAGACAAAAACTTTCAGCCAAGAATACTCTCTCCAGAAAAAAC
ATCCTCCGATATGATGGAGAAATAAAAATTTTCCCAGATAACAAAAGCTGAGGGAGTTCA
TCACCACAAGACCCCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NLGKGLEIQVKEANRTPNYINVERPSPRHILVKLA-KLVMKEYIMAEAARQK---KITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYP
NL.K.LE.QVKEANR..NYI.V.RPSPRHI..K.A.K...K........R.K...K..YK...IR.S..FS..T.Q.RREWND..KILK.KN..PRIL.P
Retrocopy
NLRKELELQVKEANRAHNYIKVKRPSPRHIAIKPA\KSKIKQKYQGWQGRRK*LTKLFYK--VIRISVSFSAETLQVRREWNDTFKILKDKNFQPRILSP


Parental protein
VKLS-FRYGREIKAFQDK-QKLREFITTRPP
.K.S..RY..EIK.F.D..QKLREFITTRPP
Retrocopy
EKTS/LRYDGEIKIFPDN/QKLREFITTRPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide