RetrogeneDB ID:
retro_ecab_743
Organism:
Horse ( Equus_caballus )
Location:
3:74917179-74917584 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.85 %
Coverage:
63.55 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L14 [Source:HGNC Symbol;Acc:10305]

Genomic region (view in browser)





>retro_ecab_743
AGAAGGCAGATGTCCACAAAGTGGGCAGCCACACAATAGGTAAAGATTGAAGCCAAAGAA
AGGAAAACCAAGATGACAGATTTTGATTGTTATAAAGTCATGAAAGCAAAGAAAATGAGG
AACAGAATAATCAAGTTTGAAGTTAGGAAGCTTCAAAAGGCAGCTCTGCTAAAAGCTTCT
CCCAGAAAACCGCTTATTGCTAAGGGGGAAGCTGGAGCAGCTGCTGCAGAGATTCCAGCA
AAAAAGATGACTGCTGTGGGCAAGAAGGCCCCAGCACAGAAGTTTCCTGCCCAGAAAGCT
GCAGGCTGGAGGGCAGCACCTCCGAAAGCTCAGAAGGATCAGAAATTTCCAGCCCAGAGA
GCACCTGCTCCAAAGGCATCTGATAGGAAAGCAGAAGAGCATAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KADINTKWAATRWAKKIEARERKPKMTDFDRYKVMKAKKMRNRIIKLEVRKLQKAALLKASPKKAPAAKGAAATAAAKVPSKKTTTAGKKAPAQKAPAQK
.....TKWAAT...K.IEA.ERK.KMTDFD.YKVMKAKKMRNRIIK.EVRKLQKAALLKASP.K...AKG.A..AAA..P.KK.T..GKKAPAQK.PAQK
Retrocopy
RRQMSTKWAATQ*VK-IEAKERKTKMTDFDCYKVMKAKKMRNRIIKFEVRKLQKAALLKASPRKPLIAKGEAGAAAAEIPAKKMTAVGKKAPAQKFPAQK


Parental protein
AAGQKAAPPKAQKGQKAPGQKTPAQKAPAPKASGKK
AAG..AAPPKAQK.QK.P.Q..PA.KA...KA...K
Retrocopy
AAGWRAAPPKAQKDQKFPAQRAPAPKASDRKAEEHK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide