RetrogeneDB ID:
retro_ecab_744
Organism:
Horse ( Equus_caballus )
Location:
3:76174403-76174794 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.0 %
Coverage:
99.24 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_744
GCCAAGGAAGTCACTGCAGGGGGAGATGCTACCATCGTTAGTACTGCCTCACGAGAGATG
CCGAGGGCTGGCCTCACCCACGATGGCCTAGCACCTGGAATTCTCGAAGCAGCTGAAGCC
TGAGACAGGCGCCAATGCCATCGTGCGGGCTTGCATCCGACTGTGATGAGCATAGCTATA
TATGTCAAGTTGGTGGACGCCCTTTGTGCTCACACCAAATCAACCTAATCAAGGTGATGA
CAACAAGAAACCAGGGGCACGGGTAGGCCTCTGCACTGACAGAGAGGGAAAATTCCCGAA
AGTGGATGGTTGCAGTTATGTGGTAGTTAAGGACTATGGCAAAGACTCTCAGACCAAGGA
TGTCGTGAAGGGGTACATCAAATGCAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AEEGIAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAH-LCVLASNCDEPMYVKLV--EALCAEHQINLIKV-DDNKKLGEWVGLCKIDRE
A.E..A.G....V.TA..E.....L.HDGLA.GI.EAA.A.D.RQ.H..C.LAS.CDE..Y...V....LC..HQINLIKV.DDNKK.G..VGLC..DRE
Retrocopy
AKEVTAGGDATIVSTASREMPRAGLTHDGLAPGILEAAEA*DRRQCH/SCGLASDCDEHSYICQVGGRPLCS-HQINLIKV/DDNKKPGARVGLC-TDRE


Parental protein
GKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
GK..KV.GCS.VVVKDYGK.SQ.KDV...Y.KCKK
Retrocopy
GKFPKVDGCSYVVVKDYGKDSQTKDVVKGYIKCKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide