RetrogeneDB ID:
retro_ecab_745
Organism:
Horse ( Equus_caballus )
Location:
3:85345418-85345718 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.34 %
Coverage:
59.41 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
60S ribosomal protein L18a [Source:UniProtKB/TrEMBL;Acc:F7CVP9]

Genomic region (view in browser)





>retro_ecab_745
AGGAGCTTCAGCATCTGGTTGTGCTATAACTCCTGCAGCAGCATCTACAACATGAACTGG
GAGTACCTAAGACCTGACCACTGTGGGTGTCATCACCCAGTATCATAACATGGAGGCCAG
CAGTGAGCTCAGGGCCCCTAGATCCTGGTCATGGAGGTGGGGAAGATCTTGACCAGCAAG
TGCAGCCTACTGGTGATCAAGAAGTTCTATGACTCCAAGATCAAGTTCCTGCTGCCCCAC
CAGGTCCAATGTTGCCAGCACAAGCCATGCTTCACCACCAAGAGGCCCAACACCTTCTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KNFGIWLRYDSRSGTHNMYREYR-DLTTAGAVTQCYRDMGARHRARAHS-IQVMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPN
..F.IWL.Y.S.S...NM..EY..DLTT.G..TQ.Y..M.A....RA...I.VM.V..I..SKC.....K.F.DSKIKF.LPH.V...QHKP.FTTKRPN
Retrocopy
RSFSIWLCYNSCSSIYNMNWEYL\DLTTVGVITQ-YHNMEASSELRAPR/ILVMEVGKILTSKCSLLVIKKFYDSKIKFLLPHQVQCCQHKPCFTTKRPN


Parental protein
TFF
TFF
Retrocopy
TFF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide