RetrogeneDB ID:
retro_ecab_746
Organism:
Horse ( Equus_caballus )
Location:
3:87909786-87910168 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.05 %
Coverage:
97.71 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS24
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S24 [Source:HGNC Symbol;Acc:10411]

Genomic region (view in browser)





>retro_ecab_746
GACACAGCAACCATCCAGACCTGAAGTTCACGACCAACCGACTACTTCAGGGGAAACGAA
TGGTCATTGATGTCCTTCGCTCTGGGAAGGCAACAGTACCTAAGACAGAAATTCGGGAAA
AACTAGCCAAACTGTACAAGATCACACAAGACGTCATCTTTGTACTTGGATTCAGAACCC
ATTTTGGTGGTGGCAAGACAACTGGCTTCAGCATGATTTACGATTCCTCGGATTACAGCA
ACTAAAAAACTAACCCAAACATAGATTTGCAAGACTTGGCCTGTATGAGAAGAAACAGAC
CTCAAGAATACAGCGAAAAGAACAAGAACGGAGTGGGAAGGTCAGGGAGACCGCTAAGGC
CAGCGTTGGTGCCGGCGAAAGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DTVTIRT-RKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAK-KNEP-KHRLARHGLYEK
DT.TI.T..KF.TNRLLQ.K.MVIDVL..GKATVPKTEIREKLAK.YK.T.DVIFV.GFRTHFGGGKTTGF.MIYDS.DY...K..P.KHR.AR.GLYEK
Retrocopy
DTATIQT/LKFTTNRLLQGKRMVIDVLRSGKATVPKTEIREKLAKLYKITQDVIFVLGFRTHFGGGKTTGFSMIYDSSDYSN*KTNP/KHRFARLGLYEK


Parental protein
KKTSRKQRKERKNRMKKVRGTAKANVGAGKK
K.TSR.QRKE...R..KVR.TAKA.VGAG..
Retrocopy
KQTSRIQRKEQE-RSGKVRETAKASVGAGER


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide