RetrogeneDB ID:
retro_ecab_747
Organism:
Horse ( Equus_caballus )
Location:
3:97903647-97904457 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
88.41 %
Coverage:
89.47 %
Frameshifts:
4
Stop codons:
0
Parental gene:
Parental gene symbol:
UNG
Parental gene aliases:
No gene alias available
Parental gene description:
uracil-DNA glycosylase [Source:HGNC Symbol;Acc:12572]
Genomic region (view in browser)
>retro_ecab_747
CATGCGACGGCCAGCCCAGCCAAGAAGGCTCGAGCCGGGCAGGAGGACCCCGGCACGCCG
CCCTCCTCGCCGCTGAGCCCGGAGCAGCTGGACCGCATCCAGAGGAACATGGCCGCGGCC
CTGCGCAGACTCGCGGCGCGCAATGTGCCCGTGGGTTTCGGCGAGAGTTGGAAGAGGCAC
CTCAGCGGAGGGTTCGGCAAACCGTATTTTATAAAGCTAATGGGGTTCGTTGCAGAAGAA
AGAAGACATCACACTGTTTATCCACCCCCACACCAAGTCGTGGACCCAAATGTGTGACCT
AAGAGATGTAAAGGTCGTCATCCTGGGCCTGGATCCGTATCACGGACCCAATCCAGCTCA
CGGGTTCTGCTTCAGTGTTCAAAGACCGGTTCCACCTCCCCCCAAGCTTGGAAAACGTTT
ATAAGGAGCTGTCCACAGACATAGACGGTTTTGTTCATCCTGGTCATGGAGATTTATCTG
CGTGGGCCAAACAAGGTGTTCTCCTACTCAACGCTGTCCTCACGGTCCGGGAGCATCAGG
CCAGTTCTCACAAGGAGAGAGGCTGGGAGGAGTTCACCGACCGGTCGTGTCCTGGCTAAA
TCAGGCCTCAAATGGCCTCGTGTTCCTGCTCTGGGGCTCTTATGCTCAGAAGAAGGGCAT
TGCCATCGACAGGAAGCGGCCCCATGTGCTGCAGACTGCTCACCCTCCCCGTTCTCCGTG
AACAGAGGCTTCTTTGGGTGTAGACATTTCTCTAAGACAAATGAGCTGCTGCAGAAGTCC
GGCAAGGAGCCCATCGACTGGAAGGAGCTG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.07 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.59 |
Parental protein coverage
Changes in the retrocopy sequence
