RetrogeneDB ID:
retro_ecab_748
Organism:
Horse ( Equus_caballus )
Location:
3:109160217-109160721 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
91.67 %
Coverage:
97.67 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_ecab_748
TTCTGATCCGCCATCTGCGGTTGCATAGCTGCCAAGATGCAGATTTTCGTGAAAACCCTT
ACGGGGAAGACCATCACTCTCGAGGTTGAACCCTAGGATACAATAGAAAATATAAAGGCC
AAGATCCAGGATACGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAG
CAAATGAAAGATGGACATGCTTTGTCTGACTACAACAATCAAAAGGAATCCACTCTTCAT
CTTGTGTTGAGACTTTGTGGTGGTGCTAAGGAAAGAAAGAAGAAGTCTTACACCACTCCC
AAGAAGAATAAGCATAAGAGAAAGAAGGTTAAGCTGGCTGTCCTGAAGTACTATAAGGTG
GATGAGAATGGCAAAATCAGTTGCCTTCGTAGGGAGTGCCCTTCAGATGAATGTGGTGCT
GGAGTTTTTATGGCTAGCCATTTTGACAGACATTATTGTGGCAAATGTTGTCTGACCTAT
TGTTTCAACAAACCAGAAGACAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FQSAICGATAAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTP
F.SAICG..AAKMQIFVKTLTGKTITLEVEP.DTIEN.KAKIQD.EGIPPDQQRLIFAGKQ..DG..LSDYN.QKESTLHLVLRL.GGAK.RKKKSYTTP
Retrocopy
F*SAICGCIAAKMQIFVKTLTGKTITLEVEP*DTIENIKAKIQDTEGIPPDQQRLIFAGKQMKDGHALSDYNNQKESTLHLVLRLCGGAKERKKKSYTTP


Parental protein
KKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
KKNKHKRKKVKLAVLKYYKVDENGKIS.LRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Retrocopy
KKNKHKRKKVKLAVLKYYKVDENGKISCLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide