RetrogeneDB ID:
retro_ecab_75
Organism:
Horse ( Equus_caballus )
Location:
10:21525986-21527669 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.82 %
Coverage:
65.8 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_75
TATGAACATAATTTATGTGCAAAGGCTTTCAGCATGGTGACAAATCTTAAGAGATGTCGC
AGAATTCACATAGAAGGGAAACCTTATGAATGTAGTGAATGTCCAAAATCCTTCAGGTAT
AGGTCAAAACTCATAATACACCAGAGAACTCACACAGGGGAAAAGCCATACAGATGTGAT
GAATGTCAGAAAGCTTTCAGTACCAAATGTCATCTCACTCTGCACCAGAGAACTCATACA
GGAGAGAAACCGTATGGATGTACGGAGTGTCAGAAATCTTTCAGAACAAAGTATCATCTC
ATTCTACACCATAGGACTCATACAGGAGAGAAACCCTATGAATGCAAAGAATGTGGGAAA
GCTTACAGGGAGAAGACGAAGCTCAGATTACATTACAGAACACACACAGGAGAGAAACCT
TTTGAGTGTAGTGATTGTGGGAAAGGTTTTATGCAGAAGTCAAACCTGATTATCCATCAA
AGAATTCATACGGGAGATAAACCCTATGGATGTGGAGACTGTGAAAAGGCCTTCTGTAGT
AAATCTCAGCTTGTTGTTCACCAGCGAATTCATACAGGAGAAAAATCTTATGAATGCAGG
GAATGTGGGAAAGCCTTCAATAAAAACTCGCACCTCATGACACATCAGAGAATTCATATA
GGAGAGAAACCTTATGAATGTAGTGAATGTGGAAAAGCTTTTGTACACACATCACAGCTC
ATTGTACATCAGAGAAATCATACTGGAAGAAAACCGTATGAATGCAAGGAATGTGGGAAA
GCTTTTAACAAAAAGTCACACTTTGTAACACATGAGAGAATTCATACTGGAGAGAAGCCA
TATGAATGCAGTGAATGTGGAAAAGCTTTCATAGACAACTCACAGCTTATTGTTCATCGA
AGAACTCATACAGGAGAGAAACCTTATGAATGCAAGGAATGTAGGAAAGCCTTTAATAAA
AGGTCATCTCTCATAACACATCAGAGAATTCATACAGGAGAGAAGCCTTATGAATGCAGT
GAATGTGGAAAGTCTTTTATAGACAAGTCACATCTCATTGTCCATCAGAGAACTCATACA
GGAGAGAAACCCTATGAATGCAGTGAATGTGGAAAAGCTTTCATACGAAAGGCAATGCTC
ATTGTACATCAGAGGACACATACAGGAGAGAAACCCTTTGCGTGTCTTGAATGCCAGAAA
GCTTTTAGCAGTATGGCAATGCTCAGTAGACATCAGTTGATTCATACAGGAGAGAAACCC
CATGGATGCAATGAATGTGGAAAAACTTTCCGGCAAAAAAGCCATCTTATTATCCATCAA
CGATGCCATACTGGAGAGAAACCCTATGGATGCATTCCATGTGGTCAAATCTTCAACCAG
AAGTCACAGCTCATTAGACATCAGAGACGTCACACAGGAGAGAAACCGTATCAGTGCACT
CAATGTGGGAAAGCCTTTTTTGAGAAATCATACCTCAATGTCCATCAGAGAAGTCATGCA
GGACAGAAACCTTATGAATGCAGTCAGTGTGGGAAAACTTTCTCTGTCAAGTTCTTTCTT
ACTTCACATGAGGAAATTCATAGAGCAAAGAAGTCTCAGGAACACAGCGAGTGCTGGAAA
GACTTTAGTGAGATGCCACATCTCACTGAATACAAAAGAATTCACACAAGAGAGACCCTT
TGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 1.22
SRP021940_cerebellum 0.45
SRP021940_embryo 3.47
SRP021940_placental_villous 0.22
SRP021940_synovial_membrane 0.36
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CGKTFSKKSQLIVHQRTHTGEKPYGCGQCGKAFSQKSLLTIHQRTHSGEKPYGCGECQKAFSRKSLLVLHQRTHTGEKPYSCRECGKAFSRKSQLKRHQR
C.K.FS....L....R.H...KPY.C..C.K.F...S.L.IHQRTH.GEKPY.C.ECQKAFS.K..L.LHQRTHTGEKPY.C.EC.K.F..K..L..H.R
Retrocopy
CAKAFSMVTNLKRCRRIHIEGKPYECSECPKSFRYRSKLIIHQRTHTGEKPYRCDECQKAFSTKCHLTLHQRTHTGEKPYGCTECQKSFRTKYHLILHHR


Parental protein
THTVEKPYGCSDCGKAFSQKLKLISHQRMHTGEKPYKCGDCGKAFFWKSQLITHQRTHTGKKPYACSECEKAFSRNSLLIRHQRIHTGEKPYECRECGEA
THT.EKPY.C..CGKA...K.KL..H.R.HTGEKP..C.DCGK.F..KS.LI.HQR.HTG.KPY.C..CEKAF...S.L..HQRIHTGEK.YECRECG.A
Retrocopy
THTGEKPYECKECGKAYREKTKLRLHYRTHTGEKPFECSDCGKGFMQKSNLIIHQRIHTGDKPYGCGDCEKAFCSKSQLVVHQRIHTGEKSYECRECGKA


Parental protein
FIRKPQLLIRHQKTHLGEKPYGCVECGKTFFGKSQLLTHQRTHTGEKPYECSECGKAFTQRSSLMSHQRTHTGEKPYECSECGKAFSEKSSLIHHQRTHT
F..K...L..HQ..H.GEKPY.C.ECGK.F...SQL..HQR.HTG.KPYEC.ECGKAF...S....H.R.HTGEKPYECSECGKAF...S.LI.H.RTHT
Retrocopy
F-NKNSHLMTHQRIHIGEKPYECSECGKAFVHTSQLIVHQRNHTGRKPYECKECGKAFNKKSHFVTHERIHTGEKPYECSECGKAFIDNSQLIVHRRTHT


Parental protein
GEKPFECGECRKAFAWKPQLLRHQRIHTGEKPYECSECGKAFVQKVQLIKHQRNHTGEKTYGCSDCAKAFFEKAQLIIHQRIHTGERPYECGECGKSFTR
GEKP.EC.ECRKAF.....L..HQRIHTGEKPYECSECGK.F..K..LI.HQR.HTGEK.Y.CS.C.KAF..KA.LI.HQR.HTGE.P..C.EC.K.F..
Retrocopy
GEKPYECKECRKAFNKRSSLITHQRIHTGEKPYECSECGKSFIDKSHLIVHQRTHTGEKPYECSECGKAFIRKAMLIVHQRTHTGEKPFACLECQKAFSS


Parental protein
KSHLMRHQRIHTGDKYYGCTECGTAFSRKKSRFVVHQRTRTGEKPFKCSERGKGFSQKSHLVTHHTVHTGEKLYGC-ECGKAFSRKSHLITHKRTHTGEK
...L.RHQ.IHTG.K..GC.ECG..F.R.KS....HQR..TGEKP..C...G..F.QKS.L..H...HTGEK.Y.C..CGKAF..KS.L..H.R.H.G.K
Retrocopy
MAMLSRHQLIHTGEKPHGCNECGKTF-RQKSHLIIHQRCHTGEKPYGCIPCGQIFNQKSQLIRHQRRHTGEKPYQCTQCGKAFFEKSYLNVHQRSHAGQK


Parental protein
PYECSDCNKVFSQTSQLIIHQRSHTGEKPYGCGECGRAFSGKSQLITHKRTHIDE
PYECS.C.K.FS....L..H...H...K.....EC...FS....L...KR.H..E
Retrocopy
PYECSQCGKTFSVKFFLTSHEEIHRAKKSQEHSECWKDFSEMPHLTEYKRIHTRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide