RetrogeneDB ID:
retro_ecab_750
Organism:
Horse ( Equus_caballus )
Location:
30:2066805-2067248 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.0 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CALM2
Parental gene aliases:
CALM2, CALM
Parental gene description:
calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Genomic region (view in browser)





>retro_ecab_750
GTAGTCGACCAATTGACAGAGGAGCAGATCGCAGAATTAAAGAAACTTTTTCACTATTTA
ACAGAGATGGTAATAGAACTGTAACAACAAAGGAATTAGGAACTGTAATGAGGTGTCTTG
TACAGAATCCCACAGAAGCAGAGTTATAGGACATGATTAATGAAGTAGGTGCTGATGGTA
ATGGTATGTTTGATTTCCCAGAATTTCTGACTTTGATGGCAAGAAAAATGAAAGACAGTG
ACAGTGATGAAGAAATTAGAGAAGCATTCCCTGTGTTTGATAAGGATGGCAATGGCTATA
CTTGTGCAGCAAAGCTTCAGCATGTGATAAACCGTGGAGTGCAGTTAACAGATGAAGAAG
TTCATGAAATGATCAGGGAAGCAGATATTGATGATGATGGTCAAGTAAACTATGAAGAGT
TTGTACAAACGATGAGAGCAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADQLTEEQIAEFK-EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG
..DQLTEEQIAE.K.E.FSLF..DG..T.TTKELGTVMR.L.QNPTEAEL.DMINEV.ADGNG..DFPEFLT.MARKMKD.DS.EEIREAF.VFDKDGNG
Retrocopy
VVDQLTEEQIAELK/ETFSLFNRDGNRTVTTKELGTVMRCLVQNPTEAEL*DMINEVGADGNGMFDFPEFLTLMARKMKDSDSDEEIREAFPVFDKDGNG


Parental protein
YISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
Y..AA.L.HV..N.G..LTDEEV.EMIREADID.DGQVNYEEFVQ.M.AK
Retrocopy
YTCAAKLQHVI-NRGVQLTDEEVHEMIREADIDDDGQVNYEEFVQTMRAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide