RetrogeneDB ID:
retro_ecab_751
Organism:
Horse ( Equus_caballus )
Location:
30:4270118-4270444 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.37 %
Coverage:
58.92 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_751
GTTTGCTACTCACTTGACCCCGAAAACCCCACACACTCATCCAAATTAACATGTTCAAAT
CTTCATGTTCACTTTAAGAACATTCCTGAAAGTGCCCAGGCCATCAAGGGTACACATATG
GGAAAAGCTATCTGAAAGTATCTGAAAGACGTCACCTTACAGAAGCAATGTGTGCCACTC
CACTGTCACAGACGTGGAGCTGGTAGGTGCACACCAGCAAACAGTGGGGCTGGACATAGG
GTCAGTGGCCAAAAATGAGTGAATTTTTGCTATACATGCTTAAAAATGCAGCAAGGAATG
CTGAACTTAAGGGTTTAGATGCAGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKAT-KYLKDVTLKKQCVPFRRYNGGVGRCAQA-KQWGWTQGRWPKKSAEFLLHMLKNAE
V.YSLDPENPT.S.K...SNL.VHFKN..E.AQAIKG.H..KA..KYLKDVTL.KQCVP......G.GRC..A.KQWGWT.G.WPK.S.EFLL.MLKNA.
Retrocopy
VCYSLDPENPTHSSKLTCSNLHVHFKNIPESAQAIKGTHMGKAI*KYLKDVTLQKQCVPLHCHRRGAGRCTPA/KQWGWT*GQWPKMS-EFLLYMLKNAA


Parental protein
SNAELKGLDVD
.NAELKGLD.D
Retrocopy
RNAELKGLDAD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide