RetrogeneDB ID:
retro_ecab_752
Organism:
Horse ( Equus_caballus )
Location:
30:23478608-23478790 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.08 %
Coverage:
64.58 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
FKBP1B
Parental gene aliases:
No gene alias available
Parental gene description:
FK506 binding protein 1B, 12.6 kDa [Source:HGNC Symbol;Acc:3712]

Genomic region (view in browser)





>retro_ecab_752
ACCTTTGCAAAGCTCCACCAGACATGCGTGGTGCATACAGCAGGATGCTTCAAGATGGAA
AGAAATTTGATTCTTCCCAGGATGGAAACAAGACAATTAAGTTTATGGTAGGCAAGCAGG
AGGTGATCCGAGTCTAGGAAGGTGTGACCCAGATGAGGATGGGCCAGAGAGCTAAACTAT
CT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TFPKKGQTCVVH-YTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT
TF.K..QTCVVH.Y..MLQ.GKKFDSS.D.NK..KF..GKQEVI....EG..QM..GQRAKL.
Retrocopy
TFAKLHQTCVVH/YSRMLQDGKKFDSSQDGNKTIKFMVGKQEVIR-V*EGVTQMRMGQRAKLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide