RetrogeneDB ID:
retro_ecab_753
Organism:
Horse ( Equus_caballus )
Location:
30:25221814-25222314 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
76.79 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
ISCU
Parental gene aliases:
No gene alias available
Parental gene description:
iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882]

Genomic region (view in browser)





>retro_ecab_753
ATGACGGCAGCTGGCCTGGGCCATCCAAGGGGGGCAGCATCAGCCCTGCTGCTTCGGAGC
TGGGGCCTGCCCAATCGGGAGCTGTCAGCTCTGGCCCGGCTATCTCACAAGAAGGTTGCT
GATCATTATGAAAATCCCAGAAATGTCTGGTCCCTTGACAAGACATCTACAAGTGCTGGA
ACTGGACTGGTGGGGGCTTCAGGATGCGGTGATGTAATACAATTACAGATTCAAGGGATA
AAAAGGGGAAGACTGTGGACACCAGGTTGGAAACATTTGGCTGTGGGTCTGCAATTGCCT
TCAGCTTGTTAACCACTGAATGGGTAAAAGGGAAGATGGTGGAGGAGGCCCTGACCATCA
AAAACACAGATATCGCCAAGGACCTCTGCCTTCCTCCTGTGAAACTGCCCTGCTCCATGC
TGGCTGAAGATGCAATCAAGGCGACCTTGGCTGATTACAAACTGAAACAAGAACCCACGG
AAGGAGAGGTGAAGAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAAGAGRLRRAASALLLRSPRLPARELSAPARLYHXQVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQV-DEKGKIVDARFKTFGCGSAI
M.AAG.G..R.AASALLLRS..LP.RELSA.ARL.H..V.DHYENPRNV.SLDKTS...GTGLVGA..CGDV..LQIQ..D.KGK.VD.R..TFGCGSAI
Retrocopy
MTAAGLGHPRGAASALLLRSWGLPNRELSALARLSHKKVADHYENPRNVWSLDKTSTSAGTGLVGASGCGDVIQLQIQG/DKKGKTVDTRLETFGCGSAI


Parental protein
ASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
A.S.L.TEWVKGK.VEEALTIKNTDIAK.LCLPPVKL.CSMLAEDAIKA.LADYKLKQEP..GE..KK
Retrocopy
AFSLLTTEWVKGKMVEEALTIKNTDIAKDLCLPPVKLPCSMLAEDAIKATLADYKLKQEPTEGEVKKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide