RetrogeneDB ID:
retro_ecab_754
Organism:
Horse ( Equus_caballus )
Location:
30:29768984-29769215 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.0 %
Coverage:
52.98 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_754
AGGCTTCCTGAGTTTAACGTGGTGGTTTCCAAACATTACAGCTCCCAAAAGATGGCTGGT
GACATACTTGACAGACTGCTCCCATGTATGGATTTTCTGTCTTTCAAAGACATGTTTCTG
GACTACAGAGCAGAAAAAGGAGGTCTAGCACTGGGCTTAAGCAGTGGTTTGGTGGCTACT
TCATTGTGCAAATCATCTTCCCAGGACACTTTGCAACACTAGCTCTCACCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKSSSVPASQNSLRP
R.P.FN...............AGDI.D.LL...DFL.FK.MFLDYRAEK.G..L.LSSGLV.TSLCKSSS....Q..L.P
Retrocopy
RLPEFNVVV---SKHYSSQKMAGDILDRLLPCMDFLSFKDMFLDYRAEKGGLALGLSSGLVATSLCKSSSQDTLQH*LSP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide