RetrogeneDB ID:
retro_ecab_756
Organism:
Horse ( Equus_caballus )
Location:
30:12015810-12016481 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
71.0 %
Coverage:
83.64 %
Frameshifts:
6
Stop codons:
2
Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Genomic region (view in browser)
>retro_ecab_756
CATGACACTAATGAAGACGTACTTGTACACCAGACTGCCATACAGAAGAATAACCCCAGG
GAGTACCTTGGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGACGTTGTTGAAGAAGAA
CAGGATGCAGAGGCAGCAAACGTTACAAGCCCTGGTGGAGTTCCAGTGCAAGGCAGTAAA
TATGCAGCAGATCAGAACCATTATAGACACTATCCATGTCCCAGGGGTCCTTCACACGAT
TACCAGTGGAATGACCAGAATAGTGAGGGAGGGGAAAGAATGGGGGTCGGAGAGCACTCC
CCAGGGCCAGGCCCAACAGCACCCCCCTACCGCAGGCCACAGCACCCACCTTATTACACG
CAGAGACCCTGTGGGCACCGCCACAGTATTCCAGTCCTCCTGCACAGGAAGAAGGGATGG
AAGGTGCTGACAAACAGGGTGCAGGAGAGCAAGGGAGGCCCGTGAAGCAGAATGTGTATC
AGGGTTTAGACCACAATTACCCAGGGTCCCTCCGTGCTGAAAGACATCCTAGAGAGGATG
GCAATGAAGAAGACAAGGAGAATCAAGGAGAGGAGACGCAAGGTCAGCAGCCACCTCAAT
GTTAGTCCCACCTCATCTTCAACTACTGATGCAGATGCCCAGAAAAACCTAAACCACCAG
ATGGCAAAGAC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.14 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.18 |
Parental protein coverage
Changes in the retrocopy sequence
