RetrogeneDB ID:
retro_ecab_757
Organism:
Horse ( Equus_caballus )
Location:
30:18959391-18959984 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.0 %
Coverage:
75.95 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS4
Parental gene aliases:
No gene alias available
Parental gene description:
40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P55832]

Genomic region (view in browser)





>retro_ecab_757
TTTGCTCCTCATCCATCTACTGGTCCCTACAAGCTGAGGTACTGTCTCCTCCTCATCATT
TTCCTAAGGGACAGACTTAAGTATGCCCTAACTGGAGATGAAGTAAAGAAGATTTGCATG
CAGTAGTTCATTAAGATTGATGGCAAGCTCCAAACCAATATAGCCTATGCTGCTGGTTTT
TTGGATGTCATCAGCATTCACAAGACTGGTGAGAATTTCCGTCTGATCTATGGCTCCAAG
GATAGCTTTCCTGTTGACCGTATTACACCTGAGGAGGCCGAGTATCACTTGTGCAAAGTG
AGAAGGATCTTTATGGCATGAAAGGAAACCCTCATCTGGTGATCCATGATGCTCACACCA
TCCGCTACCCTGATCCTCTCATCAAGGTGAATGGCACAATTCAGATTGACTTAGAGACTG
GCAAGATACCAATTTTATCATTTGACATTGGTAACCAATGTGTGGTGGCTGGAGATGCTC
ACCTGGGAAGAATTGGGATGATCACCAACAGAGGGAGATACCCTGGTTCTTTTGATGTAG
TTTATGTGAAAGATACCAATGGCAATAGCTTTGCCACTTGGCTCTCCAACATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV
FAP.PSTGP.KLR.CL.LIIFLR.RLKYALTGDEVKKICMQ.FIKIDGK..T.I.Y.AGF.DVISI.KTGENFRLIY..K..F.V.RITPEEA.Y.LCKV
Retrocopy
FAPHPSTGPYKLRYCLLLIIFLRDRLKYALTGDEVKKICMQ*FIKIDGKLQTNIAYAAGFLDVISIHKTGENFRLIYGSKDSFPVDRITPEEAEYHLCKV


Parental protein
RKIFV-GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNI
R.IF..G.KG.PHLV.HDA.TIRYPDPLIKVN.TIQIDLETGKI.....FD.GN.C.V.G.A.LGRIG.ITNR.R.PGSFDVV.VKD.NGNSFAT.LSNI
Retrocopy
RRIFM/GMKGNPHLVIHDAHTIRYPDPLIKVNGTIQIDLETGKI-PILSFDIGNQCVVAGDAHLGRIGMITNRGRYPGSFDVVYVKDTNGNSFATWLSNI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide