RetrogeneDB ID:
retro_ecab_758
Organism:
Horse ( Equus_caballus )
Location:
30:29753276-29753706 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.07 %
Coverage:
84.21 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
ERICH2
Parental gene aliases:
No gene alias available
Parental gene description:
glutamate-rich 2 [Source:HGNC Symbol;Acc:44395]

Genomic region (view in browser)





>retro_ecab_758
GGAGTTGGCAAAGATGCCGTCAATGCAGAGCAGGAGACAAATAACGAATATGGCTTTCAA
GATATTGATGATAAGTTGTCTGAATCAACAGATGATGGTGAAGATGATACCAATGATGAA
GATTATGACAAAGACAGTAACCCTAATTAGGATCTTCACGCACCATTAGAGTTAATGGCA
AAATTCCTGGGAGCAGAACTGAGCCAAGACTACCATTTGACAAAAAAATTTATGTCAGAT
GATTCTAATCTATGAACCAGAAAATCCTGAGGCCAAGGAGTTTTTCTCACTTATTGAAGA
AATGTTGCTGATGGAGAAAGCTCAGAATCTTGAGGACGATGATGAAGATAGTGAAGAAAA
CAGGAGCGGTGGGAGTGAAGGGGAGAGCAGCGAGGGTCTGAGTGAAGAAAGCTCCAACGA
ATGTGAGGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GVGKDAVIAEQEKISEYCLQDIDDKLSESTDDDGEDDTNDEDNDEDSTSNKDTHAPLELMAEFLRAEMSQDYHLAKK-LCQMILIYEPENPEAKEFFSLI
GVGKDAV.AEQE...EY..QDIDDKLSESTDD.GEDDTNDED.D.DS..N.D.HAPLELMA.FL.AE.SQDYHL.KK.LCQMILIYEPENPEAKEFFSLI
Retrocopy
GVGKDAVNAEQETNNEYGFQDIDDKLSESTDD-GEDDTNDEDYDKDSNPN*DLHAPLELMAKFLGAELSQDYHLTKK\LCQMILIYEPENPEAKEFFSLI


Parental protein
EEMLLMEKTQTLEEDDEDSEEDSSGESEGESSEDLSEESSDECED
EEMLLMEK.Q.LE.DDEDSEE..SG.SEGESSE.LSEESS.ECED
Retrocopy
EEMLLMEKAQNLEDDDEDSEENRSGGSEGESSEGLSEESSNECED


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide