RetrogeneDB ID:
retro_ecab_759
Organism:
Horse ( Equus_caballus )
Location:
30:29886197-29886926 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.4 %
Coverage:
72.86 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
ANXA2
Parental gene aliases:
No gene alias available
Parental gene description:
annexin A2 [Source:RefSeq peptide;Acc:NP_001116852]

Genomic region (view in browser)





>retro_ecab_759
GGCCGCCTGGAGATGGTGATCGGGGGCCTACTGAAAATACCCACTCGGTGTGACGCTTCC
AAGCTGAAAGCCTCCATGAAGGGGCTGGAGACTGATGAGGACCCCTCACTGAGATCCTGC
TCAAGGACCAACCAGGAGCTTCAGGCAACTAACAGAGCCCACAATGAAAGGTACAAGACT
GATCTGAGAAGGACATTGTTTCTGATACATCTGGTGACTCCCACAAGCTGATGGCTGCCC
TCACACAGCGCAGAAGAGCAGAGGAAGGCTCTGTCATTGATTAAGAACTGAGTGACCAAG
ATGCTCAGGATCGCCACGATGCTGGAGAGAAAGGAAAGGAACTGATGTTCCCAAATGGAC
CAGCATCATGACCGGGCAGAGTGTCTGTCATCTCCAGAAAGTACTTGAAAGATACAAGAG
CCACAGCCCTATGACGTGTTAGGCAGCATCCAGAAGGAGGTCAAAGGACACCCGGAGAAT
GCTTCCCTGGACCTGGTCCAGTGTATTCAGAATAAGCCCCCGTATTTTGCCAACTGACTA
TACGACTCCACGAAGGGCAAGTGGTCACGTGATAAGGTCCTGATCAGAATCACGGCCTCC
CACAGTGAAGTGGACATGTTGAAAATTAGGTCTGAATTCATGAGAAAGTACAGCAAGTCT
GTGTCCTACCACATCCAGCAAGACACCACAGGTGACCGCCAGAAGGTGCTGCTGTGTGGT
TGGGATGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDL-EKDIVSDTSGDFRKLMVALAKGRRAEDGSVIDYELI
G.LE.VI.GLLK.P...DAS.LKASMKGL.TDED......CSRTNQELQ..NR...E.YKTDL.EKDIVSDTSGD..KLM.AL...RRAE.GSVID.EL.
Retrocopy
GRLEMVIGGLLKIPTRCDASKLKASMKGLETDEDPSLRS-CSRTNQELQATNRAHNERYKTDL/EKDIVSDTSGDSHKLMAALTQRRRAEEGSVID*ELS


Parental protein
DQDARDLYDAGVK-RKGTDVPKWISIMTERSVCHLQKVFERYKSYSP-YDMLESIKKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLI
DQDA.D..DAG.K.RKGTDVPKW.SIMT..SVCHLQKV.ERYKS.SP.YD.L.SI.KEVKG..ENA.L.LVQCIQNKP.YFA..LYDS.KGK..RDKVLI
Retrocopy
DQDAQDRHDAGEK/RKGTDVPKWTSIMTGQSVCHLQKVLERYKSHSP/YDVLGSIQKEVKGHPENASLDLVQCIQNKPPYFAN*LYDSTKGKWSRDKVLI


Parental protein
RIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGDD
RI..S.SEVDMLKIRSEF.RKY.KS..Y.IQQDT.GD.QK.L..LCG.DD
Retrocopy
RITASHSEVDMLKIRSEFMRKYSKSVSYHIQQDTTGDRQKVL--LCGWDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide