RetrogeneDB ID:
retro_ecab_760
Organism:
Horse ( Equus_caballus )
Location:
31:13985482-13986059 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.87 %
Coverage:
75.98 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
OTUB1
Parental gene aliases:
No gene alias available
Parental gene description:
OTU domain, ubiquitin aldehyde binding 1 [Source:HGNC Symbol;Acc:23077]

Genomic region (view in browser)





>retro_ecab_760
TACTCACATACCTGCAAGACCAGGCCTGATGGGAACTGCTTCTATGGAGCTTTGGGATTC
TGCCACTTGGAGGCGCTGCTGAGTGACAGCAAGGAATTGCAGCCATCCAAGGCTGTGTCT
TCCAAGAGCAAAGAGGACCTGGTGTCCCAGGGCTTCACTGAGTTCACAACTGAGATATTT
CATAACACGTTTGTGGACCTGATGGAACAGGGAGAGAAACAGACCTCAGTCGTCGACCTG
CTGACCTCTTTCAACAATCAGAGTACCTCAGACTTCTTGGAGGTCTACCTACGACTGCTC
GCTTCAGGCTACCTGCAGCAGGAGACCAAGTTCTTCCAGCACTTCATCGAGGGTGAGCGA
CTGTCAAGGAATTCTGCCAGCAGAAGGTGGAGCCCATGTGCAAGGAGAGTGACCACATCC
ACGTCATCGCGCTGGCCGCGCCCCCAATGTCTCCATCCAGGTAGAATACATGGACCGCTG
TTAGGGCAGCACCAGCAAACTACAGATCTTCCCTGAGGGCTCTAAGCCCCAGGCCCACCT
TCTCTACTGGCCTGAACACTAGGATATCCTCTACAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKRTSVADLLASFNDQSTSDYLVVYLRLL
YS...KTRPDGNCFY.A.GF.HLEALL.DSKELQ..KAVS.KSKEDLVSQGFTEFT.E.FHNTF.DL.EQ.EK.TSV.DLL.SFN.QSTSD.L.VYLRLL
Retrocopy
YSHTCKTRPDGNCFYGALGFCHLEALLSDSKELQPSKAVSSKSKEDLVSQGFTEFTTEIFHNTFVDLMEQGEKQTSVVDLLTSFNNQSTSDFLEVYLRLL


Parental protein
TSGHLQRESTFFEHFIEGGR-TVKEFCQQEVEPMCKESDHIHIIALA-QALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK
.SG.LQ.E..FF.HFIEG.R.TVKEFCQQ.VEPMCKESDHIH.IALA..A..VSIQVEYMDR..G.T....IFPEGS.P...LLY.P.H.DILYK
Retrocopy
ASGYLQQETKFFQHFIEGER/TVKEFCQQKVEPMCKESDHIHVIALA/RAPNVSIQVEYMDRC*GSTSKLQIFPEGSKPQAHLLYWPEH*DILYK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide