RetrogeneDB ID:
retro_ecab_762
Organism:
Horse ( Equus_caballus )
Location:
31:18842726-18842942 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.39 %
Coverage:
55.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
COX5B
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase subunit Vb [Source:HGNC Symbol;Acc:2269]

Genomic region (view in browser)





>retro_ecab_762
CCTGCTGATGACAAGTGGGCAACTGGGCTGGAGAGGGAGCTCTTGATGGCTGCACAGAAG
GGACTGGACTCATGCAATACCCCAGCCCCAAAGGCAGCCTCAGGCACCAAGGAAGACCCC
AATTTAGTTCCTTCCGGTACCAACAAGGCAATAGCGAGCTGCATCTGTGAAAAGGACAAC
ACTGCCGTCACCTGTTTCTGGCTGCACAAAGGCGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.71

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PTDDEQATGLEREVLMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEEDNSAVIWFWLHKGE
P.DD..ATGLERE.LMAA.KGLD..N..APKAASGTKEDPNLVPS.TNK.I..CICE.DN.AV..FWLHKGE
Retrocopy
PADDKWATGLERELLMAAQKGLDSCNTPAPKAASGTKEDPNLVPSGTNKAIASCICEKDNTAVTCFWLHKGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide