RetrogeneDB ID:
retro_ecab_763
Organism:
Horse ( Equus_caballus )
Location:
31:21020599-21020943 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.12 %
Coverage:
58.29 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_763
AATTACCTTAATGCACAAAGCTCTTCTCCAAGGCATGTAATATTAAAACTGTCAAAAAAC
AATGACAAAGACACAATATTAAGGGCAGCAAAAGAGAAGAAAATAACTCACCAAGGAACA
CCTGTCAGGCTTTCAGGTTCTCCGCAGAAAATCTTCAGGCTAGGAGAGAGTGCAAGGATA
TATTCAAAATACTGAAAGGTAAAACGTATCAGTCAAGAAGACTCTATCCAGTGAAATTAT
TCTTTGGATATGATGGAGAAATAAAAGCTTTCCCAGACAAACAAAAGTTGAGGGAGTTCA
TTGCCACTAGACCTGCCTTACAGGAAATGTGGAAAGGAGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSAD-FSQTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLR
NY.N....SPRH...KL.K...K..I...AA..KKIT..G.P.RLS........Q.RRE..DI.KILK.K.Y..R.LYPVKL.F.Y..EIKAF.DKQKLR
Retrocopy
NYLNAQSSSPRHVILKLSKNNDKDTIL-RAAKEKKITHQGTPVRLSGS/SAENLQARRECKDIFKILKGKTYQSRRLYPVKLFFGYDGEIKAFPDKQKLR


Parental protein
EFITTRPPLQEMMKTAL
EFI.TRP.LQEM.K.AL
Retrocopy
EFIATRPALQEMWKGAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide