RetrogeneDB ID:
retro_ecab_764
Organism:
Horse ( Equus_caballus )
Location:
31:21715575-21716009 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.66 %
Coverage:
97.97 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
SSBP1
Parental gene aliases:
No gene alias available
Parental gene description:
single-stranded DNA binding protein 1, mitochondrial [Source:HGNC Symbol;Acc:11317]

Genomic region (view in browser)





>retro_ecab_764
AGACCTGTATTACAGGTATTTCATCAGTTTGTAAGACACGAATCTCAAATAGCTAGCAAT
TTGGTTCTTGAAAGGTCTCTGAATTGTGTGCAGTCACTTGGGCAAGTAGGTTAGTAGGCT
GTCATGAGACAGGTGGAAGGAAAAATCCGGCAACAATATTTTCTCTTGCAACAAATGAGA
TGTGGCAATCGAGGGAAAATGAGGTATATCAAATGGGCAATGTCAGTGACAAGACAACAT
AGCACAGAATACCAGTGTTCTGGCCAGGACTCAGAGATTTGGCATACCACTATATGAAAA
AGTGGTCTTGAATTTATGTGGAAGGAAAAGTTGGTTCGGGTAACTGCCCAGATAAAAATA
ATTTGAAGCAACAAGCAACAGCCATCATAGCTGATAGCATTATATTTCTGAATGACCAGA
CAAAAGAGATGGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RPVLQVLHQFVRHESEIASSLVLERSLNRVQLLGRVGQDPVMRQVEGK-NPVTIFSLATNEMWRSGESEAYQMGDVSQKTTWHRISVFRPGLRDVAYQYV
RPVLQV.HQFVRHES.IAS.LVLERSLN.VQ.LG.VG...VMRQVEGK.NP.TIFSLATNEMW.S.E.E.YQMG.VS.KTT.HRI.VF.PGLRD.AY.Y.
Retrocopy
RPVLQVFHQFVRHESQIASNLVLERSLNCVQSLGQVG**AVMRQVEGK/NPATIFSLATNEMWQSRENEVYQMGNVSDKTT*HRIPVFWPGLRDLAYHYM


Parental protein
KKGSRIYVEGKVDYGEYTDKNNVRRQATTIIADNIIFLSDQTKEKA
KK.S.IYVEGKV..G...DKNN...QAT.IIAD.IIFL.DQTKE.A
Retrocopy
KKWS*IYVEGKVGSGNCPDKNNLKQQATAIIADSIIFLNDQTKEMA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide