RetrogeneDB ID:
retro_ecab_765
Organism:
Horse ( Equus_caballus )
Location:
31:18666-19666 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
71.56 %
Coverage:
99.11 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
LDHA
Parental gene aliases:
No gene alias available
Parental gene description:
L-lactate dehydrogenase A chain [Source:RefSeq peptide;Acc:NP_001138352]
Genomic region (view in browser)
>retro_ecab_765
GCCAAGGTGGCGACCGTCCAGCGTGAGCTGCTGGAGCCCTTCTCGTCGGAGGAGGCCGTG
CGCCGCAGCAAGGTCTCGGTGGTGGGCACCGGCGCGGTGGGCATGGCCTGTGCCGTGAGC
ATCCTGTTGAAGGGCCTGAGTGACGAGCTCGCCCTGGTGGACCTCGACGAGGGCCGGCTG
CGGGGGGAGACGATGGACCTTCAGCACGGCAGCCCCTTCCTGAGGATGCCGCACATCGTG
GCCAGCAAGGACTACGTCGTCACCGCCAACTCCAGCCTCGTGATTGTCACCGCAGGCGCG
CGCCAGGAGAAGGGCGAGTCACGCCTCAATTTAGTCCAGCGAAACGTGAGCATCTTTAAG
TTGGTCATTTCCAACGTTATCCGCTACAGCCCTGGCTGCAAACTGATTGTCGTGTCCAAT
CCGGTGGACATCTTAAGTTACGTAGCCTGGAAGTTGAGCGAATTTCCCCAGAACCGCGTC
ATCGGGAGCGGTTGCAACCTGGATACCGCCCGTTTCCGCTTCTTGATTGGGCAGAGGCTT
GGCGTCCACCCCGAGAGCTGTCACGGCTGGGTCCTGGGGGAGCACGGGGACTCCAGCGTT
CCCGTGTGGAGCGGCGTGAACGTCGCCGGTGTCTCCCTGAGGGGTCTGAACACCCGCTGT
GGGGACCGACCGAGACCCCGAGCAGTGGAGAGACGTCCACCGCGACGTGATCGCCAGCGC
CTACGAGATCATCAAAAGGAAGGGCTACACGTCCTGGGCCATCGGGCTGTCGGTGGCCGA
CCTGTCCGAGAGCATCCTGAGGGATCTGCGGAGAGTGCACCCCGTCTCCACCGTGGTCAA
GGGCCTCTACGGAATCACGGAGGAGGTGTTCCTCAGCGTCCCCTGTGTCCTGGGCGAGCG
CGGCATCACCGACCTCGTGAAGGTGAAGCTGACGCCTGAGGAGGAGGCGCGTCTGAAGAA
GAGCGCGGAGACGCTCTGGGAAGTTCAGGAGGCGCTCGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.87 |
| SRP021940_cerebellum | 0.85 |
| SRP021940_embryo | 0.77 |
| SRP021940_placental_villous | 0.4 |
| SRP021940_synovial_membrane | 0.78 |
| SRP021940_testis | 117.72 |
Parental protein coverage
Changes in the retrocopy sequence
