RetrogeneDB ID:
retro_ecab_766
Organism:
Horse ( Equus_caballus )
Location:
31:1356967-1357328 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.94 %
Coverage:
77.02 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL29
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L29 [Source:HGNC Symbol;Acc:10331]

Genomic region (view in browser)





>retro_ecab_766
GCCAAGTCCGAAAACTACACCATGCATAAGCAGTCCCAAAATGGCACGGAAATGGCATCA
AGAAACTATAAAGATATGAATCTCTTAATGGGGTAGACCCCAAATTCACGAGGAACGTGA
ATTTGCCAGGAAGCACGGGACAGGTCTGAAGAAGACAGAGGCCACCAATGCCAAGGTCAT
AAGTGTGCATGCTGAGGCCATTAAGGTCCTTGTAAAACCCAAGGAGGTCAAACCCAAGAT
TCCAAAGAGTGTCAGATGCCTGTTCAGTTAACTTGCCAACATTGCCCTCCCCAAATTCAG
GAAGCACACTTGTGCGCGCAGCACCAACGGTCTCGGGTTCTGCTGGCCAAAGGGCAAAGC
T

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AKSKNHTTHNQSR-KWHRNGIKKPRSQRYESLKGVDPKFLRNMR-FAKKHNKKGLKKMQANNAKAMSARAEAIKALVKPKEVKPKIPKGGSRKLNRLTYI
AKS.N.T.H.QS..KWH.NGIK.....RYESL.GVDPKF.RN...FA.KH...GLKK..A.NAK..S..AEAIK.LVKPKEVKPKIPK........L..I
Retrocopy
AKSENYTMHKQSQ/KWHGNGIK--KL*RYESLNGVDPKFTRNVN/FARKHGT-GLKKTEATNAKVISVHAEAIKVLVKPKEVKPKIPKSVRCLFS*LANI


Parental protein
AHPKLGKRARAHIAKGLRLCRPKAKA
A.PK..K...A....GL..C.PK.KA
Retrocopy
ALPKFRKHTCARSTNGLGFCWPKGKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide