RetrogeneDB ID:
retro_ecab_768
Organism:
Horse ( Equus_caballus )
Location:
31:12419761-12420130 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.4 %
Coverage:
70.06 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_768
AAGAGTTTAGGAAATAGGGCAGATGCAATAAAAGAAAGAACTAGTAACTTGGAGGACAGG
AATTTAGAAATGACTCAGAAAAGGGGAGAGAACTAAGATTTTAAAAAAGTGAAGAAACTA
TGAGAGCTATCAGGTATGATGAGAAAAACAAATATAAGAATAACTGTTCTACCAAAAGGA
GAAGGGAGGGAGAAGAGAGCAGGGAGTGTATACAGATAAATAATAGCCAAGAACTTCCTA
AACCTGGGGAGGGAATTAGACACACAAGACAAAGAAGCTAACAGAACTCCCTCTTATCTC
AAAACAAAAAGACCTTCTCCAAGACACATTATAATGAAACTGTCAAAAATCAATGATAAA
GAAAGAATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.38
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ESINNRMDQAEE-TCELEDRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANRTPN
.S..NR.D...E.T..LEDR..E..Q.........KK.K..L.E.....RK.NIRI...P.GE...K...S....IIA.NF.NLG..LD.Q..EANRTP.
Retrocopy
KSLGNRADAIKERTSNLEDRNLEMTQ-KRGEN*DFKKVK-KL*ELSGMMRKTNIRITVLPKGEGREKRAGSVYR*IIAKNFLNLGRELDTQDKEANRTPS


Parental protein
YIKAKRPSPRHIVLKLVKVNDKEKI
Y.K.KRPSPRHI..KL.K.NDKE.I
Retrocopy
YLKTKRPSPRHIIMKLSKINDKERI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide