RetrogeneDB ID:
retro_ecab_769
Organism:
Horse ( Equus_caballus )
Location:
31:15962474-15963079 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
92.12 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
PSMB2
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, beta type, 2 [Source:HGNC Symbol;Acc:9539]
Genomic region (view in browser)
>retro_ecab_769
ATGGAGTACCTCATCGGCATCCAGGGCCCCGACTATGTCCTTGTTGCCTCCGTCCCGGTG
GCCGCTTGCAATATTGTCCAGATGAAGGACGATCATGACAAGATGTTTAAGATGAGTGAA
AAAATCTTACTCCTATGTGTTGGAGAGGCTGGAGACACTGCACAGTTTGCAGAATATATT
CAGAAAAATTTGCAACTTTACAAGATGCGAAATGGTTATGAATTGTCTCCCACAGCAGCA
GCTAATTTCACACGCCGAAACCTGGCTGACTGTCTCCGGAGTCGGACTCCATATCATATC
AACCTCCTCCTGGCTGGCTACAATGAGCATGAGGCGCTCCAGCTCTCTACTACATGGACT
ACCTGGCCGCCTTGGCCAAGGCCCCTTTCGCAGCCCACGGCTATGGTGCCTTTCTGACTC
TCAGTATCCTGGACCGATACTACACACCAACTCTCTCACGTGAGAGGGCAGTGGAGCTTC
TTAGGAAATGTCTAGAGGAGCTCCAGAAACACTTCATCCTGAATCTGCCAGCCTTCAGTG
TTCGAATCATTGACAAAAATGGCATTCACAAGCTAGACAACATTTCTTTTCCTAAACATG
GCTCC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.12 |
| SRP021940_cerebellum | 0.3 |
| SRP021940_embryo | 0.24 |
| SRP021940_placental_villous | 0.31 |
| SRP021940_synovial_membrane | 0.21 |
| SRP021940_testis | 0.47 |
Parental protein coverage
Changes in the retrocopy sequence
