RetrogeneDB ID:
retro_ecab_77
Organism:
Horse ( Equus_caballus )
Location:
13:19239885-19240878 (+)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
83.12 %
Coverage:
80.1 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
SEPHS1
Parental gene aliases:
No gene alias available
Parental gene description:
selenophosphate synthetase 1 [Source:RefSeq peptide;Acc:NP_001177348]
Genomic region (view in browser)
>retro_ecab_77
ATGGACTCCTGCGTCATACCCCTGAGGCACGGGGGCCTGTCACTGGTGCAGACCACGGAC
TTCTTTTACCCCTTGGTGGAAGATCCTTACATGATGGGGCGCATAGCTTGCGCCAACGTG
CTGAGTGACCTCTACGCCATGGGCATTACTGAATGTGACAACATGCTGATGTTGCTCAGC
GTCAGCCAGAGTATGACTGAGGAGGAAAGAGAAAAGATAACACCACTGATGATCAGAGGC
TTTCGGGACGCTGCCGAGGAAGGAGGGACTGCAGTGACTGGGGGACAGACTGTGGTAAAC
CCCTGGATTATCGTCGGTGGAGTTGCCACTGTGGTATGTCAGCCAAATGAATTTATAATG
CCTGACAGTGCGGTTGTTGGGGATGTGCTCGTGTTAACCAAACCCTTAGGAACCCAGGTT
GCTGTGAATGCCCACCAATGGCTGGATAACCCTGAAAGATGGAATAAGATAAAGATGGTG
GTCTCCAGGGAAGAGGTAGAGCTGGCCTATCAGGAAGCCATGTTCAATATGGCTACCCTA
AACAGAACTGCTGCTGGATTAATGCACACGTTTAATGCCCATGCAGCCACAGATATCACA
GGCTTTGGCATTCTAGGACATTCCCAGAACCTTGCAAAACAACAAAGAAATGAGGTGTCC
TTTGTCATACATAATCTGCCAATCATTGCCAAGATGGCTGCCATCAGCAAGGCCAGTGGA
CGCTTTGGGCTCCTTCAAGGAACCTCAGCAGAAACTTCCGGGGGGTTACTGATTTGTCTG
CCAAGAGAACAGGCAGCTCGCTTTTGTTCTGAAATCAAATCTTCCAAGTATGGAGAGGGT
CACCAAGCATGGATCGTTGGCATTGTGGAAAAGGGAAACCGGACGGCCCGGATCATTGAC
AAGCCTCGGGTTATTGAGGTCCTACCTCGTGGGGCCACTGCTACTGCTCTTGCTCCTGAC
AGTTCCAATGCCTCTTCTGAGCCTAGCTCTTGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 16.38 |
| SRP021940_cerebellum | 31.81 |
| SRP021940_embryo | 16.03 |
| SRP021940_placental_villous | 18.2 |
| SRP021940_synovial_membrane | 15.16 |
| SRP021940_testis | 14.54 |
Parental protein coverage
Changes in the retrocopy sequence
