RetrogeneDB ID:
retro_ecab_772
Organism:
Horse ( Equus_caballus )
Location:
4:2126494-2126877 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.32 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
UBA52
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]

Genomic region (view in browser)





>retro_ecab_772
ATGCAGATCTTTGTGGAGACCCTGATGGGGAAGACCATCACTCTTGAAGTCCAGCCCAGT
GACACCACTGAGAATGTCAAAGCTAAAACCCAAGACAAGGAGGGCATCCTGCCCGACCAG
CAGTGTCTGGTTTTTGTGGGCAAACAGCTAGAGGATGGCCTCACTCTTACAGAGTACAAT
ATCCAGAAAGAGTGTGCCCTGAACTTGTTGCTTCACCTGCAGGGTAACATCATCGAGCCT
TCCCTCCACCAGCTCGCCCAGAAATACAACAGCAACGAGATGACCTGCCCCAAGTGTCAC
CTCACCTGCACCCCTGCACTGTCAACTGCCACAAGAAGAAGTGTGGCCACATCAACAACC
TGTACCTGAAGAAGAACATCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCY
MQIFV.TL.GKTITLEV.PSDT.ENVKAK.QDKEGI.PDQQ.L.F.GKQLEDG.TL..YNIQKE..L.L.L.L.G.IIEPSL.QLAQKYN...M.C.KC.
Retrocopy
MQIFVETLMGKTITLEVQPSDTTENVKAKTQDKEGILPDQQCLVFVGKQLEDGLTLTEYNIQKECALNLLLHLQGNIIEPSLHQLAQKYNSNEMTCPKCH


Parental protein
-ARLHPRAVNCRKKKCGHTNNLRPKKKVK
...LHP..VNC.KKKCGH.NNL..KK..K
Retrocopy
/PHLHPCTVNCHKKKCGHINNLYLKKNIK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide