RetrogeneDB ID:
retro_ecab_773
Organism:
Horse ( Equus_caballus )
Location:
4:2894258-2894816 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.98 %
Coverage:
92.61 %
Frameshifts:
6
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL13A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L13a [Source:HGNC Symbol;Acc:10304]

Genomic region (view in browser)





>retro_ecab_773
CTGGTGTTCAATGGCCAAGGCCATCTGCTGGGCCGCGAGACACCATCATGGCCGAGCAGG
TGCTGCTGTGCTGGAAGGTGATGGTCATGCACTGTGAGGGCGGGAACGTTTCTGGCACTT
TCTACAGAAACAAGTTAAAGTACCTGGCCTTCCTCCACAAGTGTGGAACACCAACCCAGC
CTGCAGAGCCTACCACATCCAGGCCTCAGTCACATCTTTTGGTGGATGGTGGAGGCAGGT
GGCCCACAAGACCAAGAGAGGCCAGGCCGCCCTGACCGCCTCAAGGTGTTTGATGGGACC
CCGCTACCCTCTGACAAGAAAAAGCAGACAGTGGTTCCCACTTCCCTCAAGGTGGTGTGT
CTGAAGCCTCCATGAAAGTTTGTCTGCCTGGGGCACCTGGCTCACGAGGTTGGCTGGAAG
TACCAGAAGGGGACAGCCACCCTGGAGGAGAAAAGGAAGGAGAAGGCCAAGATTCATTAC
TGGAAGAAAGAGCAGCTCATGATGCTACAGAGACAGGCCAGAGAGAATGTGGAGAAGGAA
ACTGAGCAATACACAGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.14
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVLDGRGHLLGRLA-AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKR-MNTNPSRGPYHFRAP-SRIFWRTVR-GMLP-HKTKRGQAAL-D
LV..G.GHLLGR....I.A.QVLL..KV.V..CEG.N.SG.FYRNKLKYLAFL.K...NTNP....YH..A..S.IFW..V..G..P.HKTKRGQAAL.D
Retrocopy
LVFNGQGHLLGRET/TIMAEQVLLCWKVMVMHCEGGNVSGTFYRNKLKYLAFLHKC/WNTNPACRAYHIQAS/SHIFWWMVE/GRWP/HKTKRGQAAL/D


Parental protein
RLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLTRLRKQAEKNVEKKIDRYTE
RLKVFDG.P.P.DKKK..VVP..LKVV.LKP..KF..LG.LAHEVGWKYQ..TATLEEKRKEKAKIHY.KK.QL..L..QA..NVEK....YT.
Retrocopy
RLKVFDGTPLPSDKKKQTVVPTSLKVVCLKPP*KFVCLGHLAHEVGWKYQKGTATLEEKRKEKAKIHYWKKEQLMMLQRQARENVEKETEQYTD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide