RetrogeneDB ID:
retro_ecab_774
Organism:
Horse ( Equus_caballus )
Location:
4:8641875-8642485 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.74 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_774
GAGGTTGAAACTCTAAAAGAGAACCATCCAGAAATTATGGAACTGAAGAACTCAATAAAT
GAGATGAAGAATGCATTAGAAAACATTGAAAATAGAATAGACTATATAAAAGAGAGAATT
AGCAAACTTGAAGATAGAAATCTAGAAATGATTCAGGAAGAAGAAGAGAGCGAACTAAGA
TTTAAGAAGAATGAAGAAATTCTATAAGAATTATCTGATTCCATTAGAAAGGGCAACATA
AGAATAATGGATATCACAGAAGAAAGAGAGAAAGGAGCAGAGAGCTTATTTAAAGAAATA
ATAGCTGAGAACCTCCCAAACCTGGAGAAGGAACTGGATATACAAATCCATTAAGCTAAC
AGAACACCCAATTATCCCAAAACAGAAACATATTCTCCAAGACACATTATAATAAAACTG
TCAAAAATCAATGACAGAGAAAGACTTTTAAAAGCAGCTAGGAAAAAACAACAACAGAAT
AATCTACCAGGGAACCTCCATTAGGCTATCAGGAGATTTCTCAGCAGAAACTCTAGAGAC
CAGGAGAGAGCAGAGTGATACATCCAAAATATTGAAAGATAAAAAATGTTGTCCAAGAAT
ACACTATCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EINTIKKNQSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLKRNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLFK
E..T.K.N.....E.KN...E.K..L....NR.D.I.E.IS.LEDRN.E..Q.EEE.ELR.K.NEEIL.E.S.SIRKGNIR...I...EE..KGAESLFK
Retrocopy
EVETLKENHPEIMELKNSINEMKNALENIENRIDYIKERISKLEDRNLEMIQEEEESELRFKKNEEIL*ELSDSIRKGNIRIMDIT--EEREKGAESLFK


Parental protein
EIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANKKQQ-IITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNLQ
EIIA.N.PNL.KEL.IQ...A.R.PNY......SPRHI..KL.K.ND.E..L.AA.KKQQ..I.Y.G..IRLS.DFS.ETL..RRE.SD..K.LKDK...
Retrocopy
EIIAENLPNLEKELDIQIH*ANRTPNYPKTETYSPRHIIIKLSKINDRERLLKAARKKQQ\RIIYQGTSIRLSGDFSAETLETRREQSDTSKILKDKKCC


Parental protein
PRILYP
PRI.YP
Retrocopy
PRIHYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide