RetrogeneDB ID:
retro_ecab_775
Organism:
Horse ( Equus_caballus )
Location:
4:11074465-11075071 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.84 %
Coverage:
99.02 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_775
AATTCTGAAAAGAAAAACCAAACAGAAATCTGGATATGAAGAACACAATTAATGAGATAA
AAGGATAATGTAGAATCCATAAAAAATAGAGCTGACATTATAGAGGACAGAATTAGTGAT
TTAGAGGATAGACATATAGACATGCTTAAGATGGAGGAGGATAGAGAACTAAGATTTTTT
TAAAAATGAAGAAATTCTTCAAGAAATATCTGACTCAATTAGGAAAAGCAACAGAAGGAT
TATAGGTACTCAAGAGGGAGAAGAGAAGGAGAAAGGAGTAGAGAGCTTGTTCAAAGAAAT
AATAGCTGACAACTTCCCAAACCTCAGGCAAGAACTGGACTTACAAGTACATGAAGCCAA
TAGAACTAATTATATCAACACAAAAAGACCCTCTCCAAGGCATATACTACTAAAACTGGC
AAAAGTCAATGACAAAGAAAATTAAATAGTATCCACTGAGCAAGGCAGAAGAAAATAATC
TACAAAGGAGGTCCTACAAAGCTTTCAGTGGATTTCTCAGCACAAACCTTACAGACTAGG
AGAGAATAGAATGATATACTCAAAATACTGAAAGACAAAAAATTCCAGCCAAGAATACTC
TAACCG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NTIKKNQS-KTLEMKNTMDEVK-KNLGSVNNRADIIEETISSLEDRNIEILQIEEERELRLK-RNEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLF
N..KKNQ....L.MKNT..E.K..N..S..NRADIIE..IS.LEDR.I..L..EE.RELR....NEEILQE.S.SIRK.N.R.IG..EGEEK.KG.ESLF
Retrocopy
NSEKKNQT/RNLDMKNTINEIK\DNVESIKNRADIIEDRISDLEDRHIDMLKMEEDRELRFF\KNEEILQEISDSIRKSNRRIIGTQEGEEKEKGVESLF


Parental protein
KEIIAGNFPNLGKELEIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANK-KQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNL
KEIIA.NFPNL..EL..QV.EA.R..NYI..KR.SPRHI..KLAKVNDKE..........Q..I.YKG.P..LS.DFS..TLQ.RRE..DI.K.LKDK..
Retrocopy
KEIIADNFPNLRQELDLQVHEANR-TNYINTKRPSPRHILLKLAKVNDKEN*IVSTEQ/RQKKIIYKGGPTKLSVDFSAQTLQTRRE*NDILKILKDKKF


Parental protein
QPRILYP
QPRIL.P
Retrocopy
QPRIL*P


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide