RetrogeneDB ID:
retro_ecab_776
Organism:
Horse ( Equus_caballus )
Location:
4:19098777-19099235 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.58 %
Coverage:
90.7 %
Frameshifts:
6
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_ecab_776
ATGCAGATTTTTGCAAAAATCCTATGGAGAAGACCATCATTCTCAAGGTTTAACCCTCAA
TACACTGGAAAAGGTAAAGACCAAGATCCAGGTTGATGAATGAATTCCTCATGATCAGCA
GACTGATCTTTGCTGGTGAGCAACTGGAAGATGGATGTATTTTGCCTGACCACAACATTC
AAAGGAGTCCATTCTTCATCTTATGTTGAGACTTTATAGGATGCTAAGAAAAGGAAGAAG
TCTTATACTACTCCTGAGAAGATAAGCCCAAGAGAAAGGAGTTTGAGCTGGCTGTCCTGA
AATTCTACAACGTGGACAAGAATGAAAATATCAGTTGCTTTTGTTGGAAGTGCCCTTCAA
ATGAATGTGCTGGTGGAGATTTTATGGCCAGCCACTTTGACAAACATTATCATGACAAAT
GTTGTCTGACTTATTGCTTGAATAAACAAGAAGACAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTL-TGKTITLEVEPS-DTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLRG-GAKKRKKKSYTTPKK-NKHK
MQIF.K.L...KTI.L.V.PS..T.E.VK.KIQ..E.I.P..Q.RLIFAG.QLEDG..L.D.NIQ.KES.LHL.LRL....AKKR.KKSYTTP.K..K.K
Retrocopy
MQIFAKIL/MEKTIILKV*PS/NTLEKVKTKIQVDE*I-PHDQ\RLIFAGEQLEDGCILPDHNIQ/KESILHLMLRLYR/DAKKR-KKSYTTPEK/DKPK


Parental protein
RKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
RK...LAVLK.Y.VD.N..IS.....CPS.EC..G.FMASHFD.HY..KCCLTYC.NK.EDK
Retrocopy
RKEFELAVLKFYNVDKNENISCFCWKCPSNECAGGDFMASHFDKHYHDKCCLTYCLNKQEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide