RetrogeneDB ID:
retro_ecab_777
Organism:
Horse ( Equus_caballus )
Location:
4:25426469-25426709 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.5 %
Coverage:
52.98 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_777
ATGGGTCACATGTATGCTCCTGTGAAGGGCTTGTCCCAGTAGGCTCTGCCCTTCTGCCAC
AGCATCCCCACCTGGCTGCAGTTGATGTTTGATGACACAAAAGAGGAGATCTACAAACTG
GCCAATAAGTGCCCGACTCCCTCACAAACCGATGTGGTCCTGAGACACTCACATGGCACT
GAACAAGTATGCTTTGTGACAGACAATAAAATCTTGGGAATTCTTAAGTACAAAGGACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL
MG.M.AP.KGLSQ.ALP...S.PTWL.L..DD.KE.IYKLA.K..TPSQ..V.LR.SHG..QV.FVT.NKIL.ILK.KGL
Retrocopy
MGHMYAPVKGLSQ*ALPFCHSIPTWLQLMFDDTKEEIYKLANKCPTPSQTDVVLRHSHGTEQVCFVTDNKILGILKYKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide