RetrogeneDB ID:
retro_ecab_78
Organism:
Horse ( Equus_caballus )
Location:
3:817668-818988 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
93.22 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_78
ATGGCTTTAGATCTCAGAATCTCATTTCAAGGTGAACCATCCAGGAATGATCCTGGGTTA
GAAAATCACGAGTTTAATCCCAGTCAAGTACCTGCTGTCCAAGAGGGGGAGGGGATCTCT
GAGTTCCCGAGCACTCAACACAGCTTATTTCAAATTGGCAAGAACTCATGTACAAGGAAG
GAACTGCAAAGACTCTATAAGTTATTTCACTCCTGGCTACAGCCAGAAAAACAAAGCAAG
GATGAAATGATTTCTTGTTTGGTCCTGGAACAATTTATGATCAATGGCTACTGCAGTGAC
AGGTCCATGTTGAAAGAGAAATGGGAATCAAGTGGCAGAAACCTGGAGAAATTCATGGAA
GATCTGACCGATGATGGCATGAAGCCACCTTGCTTAGTCCACGTCTGCATGCAGGGGCAG
GACGCTCTCTTTTCTGAGAACATGCCCTTAAGAGAAGTCATCGTTCACCTCACAAAACAG
TTGTTAACAGGAACCCCAACTGGAGAGAACATGGGGACCCCTTTCGGGACTCCCAAAGAT
CATTCCCTGGAAACAGAACAAGGAGATGAAGATAAAGAAAATGGTGGCAACATTTCTTTG
AAAACTTGTCAAGTAAATGACAGTATGACTAGTCAAGACAATCAAACGCCTTCCCTACTC
ATCATCCAGGGAGAGAACCGGCCTGGGCCTGGAGAGGGAGGTGTTCCTTTGGAGAATCCA
CTCAGCTCCAGAAGAGCAGGTCTAGGCACCTGCAGGTCCCAGGAAGAGTCCCTGAAAGGA
CCCCCTTATCAAGATGTCGTTATAGAGGTGGGACCAGGGTTTCTCTCCCGGGCAAACCAG
GTTATGCCTGAGTGTGTTCCTACCCACCAGAGCATTGAGGGAAACTCAGCATGTGGGGGA
CACCAAGAAAGATCCCACAGAGCCCCCAAATCATACAAATGTGAGAAGTGTCCCAGGATC
TTTAGGTATCTGTCTCGGTTAAAAGCCCATCAAAGAAGACACAATAATGAGAGGACATTT
ATTTGTGGCCAGTGTGACAAAGGCTTCTTCCAGGCATCAGACCTACGCGTGCAACAGAAG
ATTCACACAGGAGAGAAACCTTTCAAATGCAGCACATGTGAAATGTCCTTCAGCCACAAA
ACCAACCTTCGGGCTCATGAGAGAATCCACACAGGGGAGAAGCCCTATGTGTGTTCCCTT
TGCCAGAGAAGCTACCACCAGTCATCCACCTACCACCGCCACCTGAGGACTCACCAGAAA
ATTGCTTTCAAAAGTGTTCCCTCCACACCAGATGCTTCCTCGGGTACAGTGCCAATGTAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.3
SRP021940_embryo 0.05
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MALDLRISFQGEPSRNDPGSENHEFNPRQVPAVQDGERISKFPSTQHSLFQNGKNSCARQELQRLYKLFHSWLQPEKHSKDEMISRLVLEQFMINGYCSD
MALDLRISFQGEPSRNDPG.ENHEFNP.QVPAVQ.GE.IS.FPSTQHSLFQ.GKNSC.R.ELQRLYKLFHSWLQPEK.SKDEMIS.LVLEQFMINGYCSD
Retrocopy
MALDLRISFQGEPSRNDPGLENHEFNPSQVPAVQEGEGISEFPSTQHSLFQIGKNSCTRKELQRLYKLFHSWLQPEKQSKDEMISCLVLEQFMINGYCSD


Parental protein
RSMLKEKWESSGRNLEKFMEDLTDDGMKPPGLVHVCMQGQEALFSENMPLREVIVHLRKQFSTGTQTGENMGTPFQTPKDHSLETEQGDEDKENGGNISL
RSMLKEKWESSGRNLEKFMEDLTDDGMKPP.LVHVCMQGQ.ALFSENMPLREVIVHL.KQ..TGT.TGENMGTPF.TPKDHSLETEQGDEDKENGGNISL
Retrocopy
RSMLKEKWESSGRNLEKFMEDLTDDGMKPPCLVHVCMQGQDALFSENMPLREVIVHLTKQLLTGTPTGENMGTPFGTPKDHSLETEQGDEDKENGGNISL


Parental protein
KTCQVNDSMTSQGNQTPSLLIIQGENRPGPGEGGVPLENPLSSRRAGLGSCRSQEESLKGPPYQDVLIEVRPGFLSRPNQVTPERVPTHQSIEGNSACGG
KTCQVNDSMTSQ.NQTPSLLIIQGENRPGPGEGGVPLENPLSSRRAGLG.CRSQEESLKGPPYQDV.IEV.PGFLSR.NQV.PE.VPTHQSIEGNSACGG
Retrocopy
KTCQVNDSMTSQDNQTPSLLIIQGENRPGPGEGGVPLENPLSSRRAGLGTCRSQEESLKGPPYQDVVIEVGPGFLSRANQVMPECVPTHQSIEGNSACGG


Parental protein
HQERSQGAPKSYKCEKCPRIFRYLSRLKAHQRRHNNERTFICGQCDKGFFQASDLRMHQKIHTGEKPFKCSTCEMSFSHKTNLRAHERIHTGEKPYVCSL
HQERS..APKSYKCEKCPRIFRYLSRLKAHQRRHNNERTFICGQCDKGFFQASDLR..QKIHTGEKPFKCSTCEMSFSHKTNLRAHERIHTGEKPYVCSL
Retrocopy
HQERSHRAPKSYKCEKCPRIFRYLSRLKAHQRRHNNERTFICGQCDKGFFQASDLRVQQKIHTGEKPFKCSTCEMSFSHKTNLRAHERIHTGEKPYVCSL


Parental protein
CQRSYRQSSTYHRHLRTHQKIAFKSVPS
CQRSY.QSSTYHRHLRTHQKIAFKSVPS
Retrocopy
CQRSYHQSSTYHRHLRTHQKIAFKSVPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide