RetrogeneDB ID:
retro_ecab_780
Organism:
Horse ( Equus_caballus )
Location:
4:28300981-28301410 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.53 %
Coverage:
69.91 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
SGTA
Parental gene aliases:
No gene alias available
Parental gene description:
small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha [Source:HGNC Symbol;Acc:10819]

Genomic region (view in browser)





>retro_ecab_780
GGCCTGCGCGGTCTATGTCTGTACCAGAGCTTCCGCACAAGCACACTGAACTACTACTAC
GAGGAGGCCTTGGAGCTGGGCCCGGACTAGAAGACTTGCAAGTCGAATCTCAAGATAGCC
AACTGAAGCTGAGAGAGGGCCAAGTCCCACAGGAAGCTTTGACATCACCGGCAAGCTGAA
GAACCCAAGCTTCAGGAGCATGGCGTCAAACCTAATGAACAATCCCCAAGTTCAACAGCT
CATGTCTGGGATGATTTCGGTGGCCATAAACACTTAGGGACTCCTGGCACCAACCCTTCA
CAGAAAGACCTGGCCAATCTCATCCAGGCGGGCCAGGAGTTCGTTCAGCAGATGCAGCAG
CAAAATCCAGAGTTGACAGAACAGCTCAGAAGTCAGACCCCCAGGGCCAACAAGGATGAC
CTGCAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GRMGLALSSLNKHTEAVAYYKKALELDPDNEKYKSNLKIA-ELKLQEGT-SPTGGVGSFDIAGLLNNPSFMSMASNLMNNPQVQQLMSGMIS-GGHNPLG
G..GL.L...........YY..ALEL.PD....KSNLKIA..LKL.EG..SPT...GSFDI.G.L.NPSF.SMASNLMNNPQVQQLMSGMIS.GGH..LG
Retrocopy
GLRGLCLYQSFRTSTLNYYYEEALELGPD*KTCKSNLKIA/QLKLREGQ/SPT---GSFDITGKLKNPSFRSMASNLMNNPQVQQLMSGMIS/GGHKHLG


Parental protein
TPGTSPSQNDLASLIQAGQQFAQQMQQQNPELIEQLRSQIRSRTPSASNDDQQE
TPGT.PSQ.DLA.LIQAGQ.F.QQMQQQNPEL.EQLRSQ....TP.A..DD.QE
Retrocopy
TPGTNPSQKDLANLIQAGQEFVQQMQQQNPELTEQLRSQ----TPRANKDDLQE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide