RetrogeneDB ID:
retro_ecab_783
Organism:
Horse ( Equus_caballus )
Location:
4:35011541-35011832 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.0 %
Coverage:
57.8 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_ecab_783
GCACTGCCGTCCAACCAGACTGTTGATGACTGGTTATGTCTTGTGAAAATGAAGTTTCTT
AAGAACCTGGCATTGTATCAGTCACATATTGCAGGACTTAGGAGAGCTCTAATGCTTGTT
GCCCTAGCATTAATTGAAGGTGGAATGACATATGAAGATGCAGTAAAGTTCGTAAGACAA
AAGCGGAGTAGAACTTTTAAAAGCAGGCAACTTTTGTATTTGGAGTATTGTCCTAAAATC
CAGCTGCACTGCATAGATACCAGTAGTCATGGAAACTACTGTTGCTGTCAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
APPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCVQ
A.PSNQ.VDDWL.L...K..............AGL.RA..LVALALIEGGM.YEDAV.F.RQKR...F.S.QLLYLE.Y.PK..L...D...H.N.CC.Q
Retrocopy
ALPSNQTVDDWLCL--VKMKFLKNLALYQSHIAGLRRALMLVALALIEGGMTYEDAVKFVRQKRSRTFKSRQLLYLE-YCPKIQLHCIDTSSHGNYCCCQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide