RetrogeneDB ID:
retro_ecab_785
Organism:
Horse ( Equus_caballus )
Location:
4:40986032-40986653 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.37 %
Coverage:
98.6 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
NACA
Parental gene aliases:
No gene alias available
Parental gene description:
nascent polypeptide-associated complex alpha subunit [Source:HGNC Symbol;Acc:7629]

Genomic region (view in browser)





>retro_ecab_785
GAAGCCACAGAAACCATTCCTGCTACAGAGCAAGAGTTGCCACAGACCCAGGCTGAGACA
GGGTCCGGAACAGAATCTGACAGTGATGAATCAGTATCCGAGCTTGAGGAGCAGGATTCC
ACACAAGCAGCCGACCTAGCAGCAGCAGCTGGAAACCATGAACAACCAGTCAGTAAGGCA
AAATAAAGCCGGAGTGAAAAGAAGGCACAGAAGGCTATGTCCAAACTGGGTCTTCGACAG
GTTACAGGGGTTATTAGAGTCACTATCTAGAAACCGAAGCAAATCTTCTTAGTCATCACA
AAACCAGATGTCTACAAGAGTCCAGCTTCAGGTACCTACATAGTTTTGGGAGAAGCCAAG
ATCGAGGTTTTATCTCAGCAAGTGCAGCTGGCAGCTGCTGAGAAATTCAAAGTTCAAGGT
GAAGTGTCTCAAACGTTCAAGAAAACACAGACTCCAGCTGCACAAGAGGAGAGTGAAAAG
GAAGAAGCTGATGAAACAGATGTGGAAGTTAAGGATATAGAATTGGTCATGTCACAAGCA
AATTTGTCAAGAGCAAAGGCAGTCTGAGCCCTGAAGAACAACAGTAACGATATTGTAAAT
GCTATTCTGGAATTAACAATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKARKAMSKLGLRQVTGVTRVTIRKSKNIL
EATET.PATEQELPQ.QAETGSGTESDSDESV.ELEEQDSTQA....A.LAAAA...E.PVSKAK.SRSEKKA.KAMSKLGLRQVTGV.RVTI.K.K.I.
Retrocopy
EATETIPATEQELPQTQAETGSGTESDSDESVSELEEQDSTQA----ADLAAAAGNHEQPVSKAK*SRSEKKAQKAMSKLGLRQVTGVIRVTI*KPKQIF


Parental protein
FVITKPDVYKSPASDTYIVLGEAKIEDLSQQAQLAAAEKFKVQGE-AVSNIQENTQTPTV-QEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKN
.VITKPDVYKSPAS.TYIVLGEAKIE.LSQQ.QLAAAEKFKVQGE..VSN.QENT.......E...E.E.DET.VEVKDIELVMSQAN.SRAKAV.ALKN
Retrocopy
LVITKPDVYKSPASGTYIVLGEAKIEVLSQQVQLAAAEKFKVQGE/SVSNVQENTDSSCT\EESEKE-EADETDVEVKDIELVMSQANLSRAKAV*ALKN


Parental protein
NSNDIVNAIMELTM
NSNDIVNAI.ELTM
Retrocopy
NSNDIVNAILELTM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide