RetrogeneDB ID:
retro_ecab_786
Organism:
Horse ( Equus_caballus )
Location:
4:45063802-45064599 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.33 %
Coverage:
90.72 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_786
AATCTAACTGATAAAGAGGACAAACTAATAGTCATAGGGATGCTCAATGATCTTGGGAGA
AGAATGGATGAACACAGTGAGAACTTCAACAAAGAATTGGAAAATATAAAAAAGAACCAA
TCAGAACTGAAGAATACAATAATGGAAACGAAAAATTTGTTAGAGGGAATCAGCAGCAGA
GGAGATGACACAGAAGAATGGATCAGCACGCTGGACAAAAGACTAGAGGAAATCACTCAA
GCTGAATGGAAAAAGGAATTAAGAAGAACGAGGACAGTCTAGGGGACCTCTAGGACAACA
TCAAGCATATTAACATCCATAGTATAGGTGTCCCAGAAGGAGAAGAGAGAGACAAAGGGG
CAGAGAATAAATTTGAAGAAATAATAGCTGAAAACTTTCCTAACCAAAGGAAGGAAACAG
ACATTCAGGTACAGGAAGAACAAAGAGCACCAAACAAGATGAACCCAAAGAGTCCCAAAC
CAAGACGCATTATAATTAAACTGTCAAGAATTCAAGACAGAGAATCCTAAAAGCTACAAG
AGAAAGGCAACAAGTCACAAAAGAAACCCCATACAAGGCTATCAGCTGACTTCTCAGCAG
AAACCTTACAGGCTAGAAGGGAATGGAGTGATATATTTAAAGTGCTGAAAGGAAAAAATG
TACAGCCAACAATACTCTACTCAGCAAGGTTATCATTCAGAACGGAAGGAGAGATAAAGA
GTTTCCCAGATAAGCAAAAACTACAGGATTTTATCACCAACAAACCAGCCTTATTAGAAA
TGTTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEK-MKKTDSLRDLWD
NL.DK..K..V...L.DLGRRMDEHSENFNKELENIKK.QSE.KNTIME.KN.LEG..SR.DDTEE.IS.LD.RLEE.TQAE..KE...K..DSL.DL.D
Retrocopy
NLTDKEDKLIVIGMLNDLGRRMDEHSENFNKELENIKKNQSELKNTIMETKNLLEGISSRGDDTEEWISTLDKRLEEITQAEWKKEL/KKNEDSLGDL*D


Parental protein
NIKCTKIRITGVPE-EEGDKGAEIYLIK-IAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARERQQVTYKGNSIRLSA
NIK...I...GVPE.EE.DKGAE......IAENFP...KE.D.QVQE.Q.APN..NPK...PR.II.K.S...R...R......E......K....RLSA
Retrocopy
NIKHINIHSIGVPEGEERDKGAENKFEEIIAENFPNQRKETDIQVQEEQRAPNKMNPKSPKPRRIIIKLS---RIQDRES*KLQEKGNKSQKKPHTRLSA


Parental protein
DLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
D.SAETLQARR.W..IFKVL..K...P.ILY.AR.SF..EGEIK.FPDKQKL..FIT.KPAL.EMLKGLI
Retrocopy
DFSAETLQARREWSDIFKVLKGKNVQPTILYSARLSFRTEGEIKSFPDKQKLQDFITNKPALLEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide