RetrogeneDB ID:
retro_ecab_787
Organism:
Horse ( Equus_caballus )
Location:
4:51183186-51183776 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.31 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_787
GTAGAGGATAAAAATATATAAGCTTTGCAGGTGGAGGAGGAGAAAACTTAGATTTTGAAA
AAATGAAGGAATTCTTTGAGAAATATCTGAGTCAACAAGGGAAAGCAACATAAGGATTAT
AGGTGTTCCAGAGGGAGAAGGGAGAGAGAAAGGAGCAGAGAGCTTGTTCAAAGAAATAGC
CGCTGAGAACTTCCCAAACCTGGGGAAGAAACCAGACTTACAAATACATGAAGCCAATAG
AACTCCTAATTACATCAATGCTAAAGGACCTTCTGCAAGGCATATAATAGTAAAACTGGC
AAAAGTCAATGACAAAGAAAAAATATTAAGTGCAGCAAGGCAGAAGAAAATACAAAGGAA
CCCCTATCAGGCTTTCAGAGGATATCTCAGCAGAAACCTTACAGGCTAGCAGAGAATGGA
ATGATATATTCAAAATACTGAAAGACAAAAAATTTTCAGCCAAGAATACTGTATCCAGTA
AAACTATCTTTCAGATCCTATGGAGAAATAAAGCTTTCTCAGATAAACAAAAGCTAAGGG
AGTTCATTGCCACCATACCTCCCCTACAAAAAATGATGAAGGATGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEE-RELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVK
.ED.N...L...EE.R.LR....E.I..EI....R..NIRII..P.GE.R....ESLFKEI..ENF.NLGK....Q..EANRTPNYIN...PS.RHI.VK
Retrocopy
VEDKNI*ALQV-EE\RKLRF*KNEGIL*EISESTRESNIRIIGVPEGEGREKGAESLFKEIAAENFPNLGKKPDLQIHEANRTPNYINAKGPSARHIIVK


Parental protein
LA-KLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILK-YKNYPPRILYPVKLSFRYGREI-KAFQDKQKLREFITTRPPLQEMM
LA.K...K........R.K...YKG.PIRLS.D.S..T.Q..REWNDI.KILK..KN..PRILYPVKLSFR...EI.KAF.DKQKLREFI.T.PPLQ.MM
Retrocopy
LA\KSMTKKKY*VQQGRRK---YKGTPIRLSEDISAETLQASREWNDIFKILK\TKNFQPRILYPVKLSFRSYGEI/KAFSDKQKLREFIATIPPLQKMM


Parental protein
KTAL
K.AL
Retrocopy
KDAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide