RetrogeneDB ID:
retro_ecab_788
Organism:
Horse ( Equus_caballus )
Location:
4:55178416-55179341 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
74.84 %
Coverage:
56.52 %
Frameshifts:
2
Stop codons:
2
Parental gene:
Parental gene symbol:
ATP5A1
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle [Source:HGNC Symbol;Acc:823]
Genomic region (view in browser)
>retro_ecab_788
CTCCCTCTGCAGGCCAGTCTGGTCTCCAAAAATGCTTTGGGATCTTCTTTGATTGTCACA
AGGAACCTCCTTGCCTCTAACACTTGTCTTCAGAAGGCTGGCACTGCCAAGGTGTCCTCT
GTTCTCAAAGGGTGTATTCTTGGAGCTAATACCTCTGTTGCCCTTGAAGAGACTGGATGT
GTCTCAAGTATTGATGGTGGTATTGCTCGAGTACATGGGCTGAGGAATGTTCAAGCAGAA
GAAAGCATAGAATTTTTTTCAGGCTTAAAGGGTATGTCTCTGAACTTGGAACCTGACAAT
GCTGTTGTTGTTGTGTTTGGAAACAATAAACTAATTAAGGAAGGAAATATTATGAAGAGT
GCAGGAGCCATTGTGGGCATTCTAGTTGGTGAGAAACTGTTGGGTCATGCAGTAGATGCC
CTTGGTAATGTTATTGATGGAAAGGGTCCAGTTGGTGCCAAGACCTGTAGGTGAGTTGGC
CTGAAAGCCCTTGGGATCATTCCTCCAAACTCTGTGCAGGAACCAATGCAGATGGGCATT
AATGCTGTGGATAGCTTGGTGCCAATTTGTCGTGGTCAGCCTGAGCTGATTGTCGGTGAC
CGACAGACTGGCAAAACATCAATGATTGACAAGATCATTAGCCAGAAATGTTTCAATGAT
GAATCTGATGAAAAGAAGAAGCTATACTGTATCTACATTTCTATTGGTCAAAAGAGATCC
ACTGTTGCCCAATTGGTGAAGAGACTTACAGATACCATGAAGTACACCATTGTGGTTTTA
GCTACTGCTTCTGATGCTGGCCCACATCAGTACCTGACTCCTTATTCTGCCTTTCTATGG
GAGAAAATTTAGAGATAATGGCAAACATGCTTTGATCATCTATGACGAGTTATCCAGATA
GACTATTGCTTATTGTCAGATGTCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
