RetrogeneDB ID:
retro_ecab_790
Organism:
Horse ( Equus_caballus )
Location:
4:57424173-57424694 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.77 %
Coverage:
86.93 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_790
AAAGAAATATCTGACTCAATTAGGAAATGTAACAGAAGGATTATGAGTATTCCAGGGGGA
GAAGCAAGGGAGAAAGGAGGAGAGAGCTTGTTCAAAGAAATTATAGCTGAGAACTTCCTA
AACCTGGAGAAGGAGCTGGAAGTACATGTAAATGAAGCAAATAGAACTGCTAACTACATC
AAGATAAAAAGACTTTCTCCAAGACCTGTATTAGTAAAACTGGTGAAAGTCAATGACAAA
GAAAAAATACTAAGGGCAGCAAGGCAGAAGAAAATAACCTACAAAGGAACTCCTATCAGG
CTTTCAGAGGATTTCTCAGCAGAAATATTACAGGCTAGGAGAGGAATGATATATTAAAAA
TTCTGAAAGCCAGAAACTTTCAGCCAAGAATACTCTATCCAGTGAAAATATCCTTCTGGT
ATGATGGAGAAATAAAAACTTTCCCAGATAAACAAAAGCTGAGGGAGTTCATCAACTCAA
GACCACGCCCCCCTTCCCAAGAAATGATCAAGAAGGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPI
.EI...IRK.N.RI.SIP.GE.R....ESLFKEII.ENFLNL.K.LE..V.EANRT.NYI...R.SPR..LVKL.K...KE.I...AARQKKITYKG.PI
Retrocopy
KEISDSIRKCNRRIMSIPGGEAREKGGESLFKEIIAENFLNLEKELEVHVNEANRTANYIKIKRLSPRPVLVKLVKVNDKEKIL-RAARQKKITYKGTPI


Parental protein
RLSADFSQTVQTRR-EWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITT--RPPLQEMMKTAL
RLS.DFS......R.E.NDI.KILK..N..PRILYPVK.SF.Y..EIK.F.DKQKLREFI....RPP.QEM.K.AL
Retrocopy
RLSEDFSAEILQAR/ERNDILKILKARNFQPRILYPVKISFWYDGEIKTFPDKQKLREFINSRPRPPSQEMIKKAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide