RetrogeneDB ID:
retro_ecab_791
Organism:
Horse ( Equus_caballus )
Location:
4:63362488-63362923 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
54.67 %
Coverage:
91.82 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Sulfurtransferase [Source:UniProtKB/TrEMBL;Acc:F6XRG6]

Genomic region (view in browser)





>retro_ecab_791
GCTGCCCTCTGGTCTTTGGATGCTATGCTCAAGGATTTGAGGTCAATAAAGGGAAGCTGC
CAGAATTTCAGCATTTCCTTCCTAAAGAAGTCATTTATCAAGAACCTAAAAACCTACTAA
ATTACAAAACATTGTATTAATTGATGTTAGAGAGACATTGGAAATTCTTGATATTGAAAA
ATTCTAGAGTTCATCAATATACCATTAGATGAGATAGGTCAAGCTCATATGAACCCAGGA
TATTTCAAAGAGAAGTACAATAAAGTAAAACCATACGAATCTGACAGTTTAGTGTTTTCT
TGTCTAGCTAGATAAGAAAGAAACGAGAAGACTTTGAACACAGCAATGTCTTTGTGCTTT
AATAGTGCTCAACAATATGCTGGAGATTGGAAGAAGTGGGCAACATGGGAATTTTCAGAG
AATAAACAAAGAAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AILGSADSALWGVKSIKGSCHNFCTA-VSEDVTYEELKNRLNSK-SIMLIDVREKWEILE-YGKIPGSVNIPLAEVSEALQMNPKAFHEKYNEAKPSRSD
A.L.S.D..L....SIKGSC.NF........V.Y.E.KN.LN.K..I.LIDVRE..EIL..Y.KI....NIPL.E...A..MNP..F.EKYN..KP..SD
Retrocopy
AALWSLDAMLKDLRSIKGSCQNFSIS/LPKEVIYQEPKNLLNYK/NIVLIDVRETLEILD/Y*KILEFINIPLDEIGQA-HMNPGYFKEKYNKVKPYESD


Parental protein
RLVFSCVAG-VRSKKALDTAISLGFSSAQHYAGGWKEWATYECSEKKERN
.LVFSC.A...R..K.L.TA.SL.F.SAQ.YAG.WK.WAT.E.SE.K.R.
Retrocopy
SLVFSCLAR*ERNEKTLNTAMSLCFNSAQQYAGDWKKWATWEFSENKQRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide