RetrogeneDB ID:
retro_ecab_795
Organism:
Horse ( Equus_caballus )
Location:
4:88945278-88945957 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.51 %
Coverage:
63.03 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
SLC10A7
Parental gene aliases:
No gene alias available
Parental gene description:
solute carrier family 10 (sodium/bile acid cotransporter family), member 7 [Source:HGNC Symbol;Acc:23088]

Genomic region (view in browser)





>retro_ecab_795
GCAGCTGCACTATTTAATTCAGCCTTTGGAAGTTTTTTGGGCATCGTTATAACACCCTTA
CTATTGCTGCTTTTTCTTGGCTCATCCTCTTCTGTGCCTTTTACATCTATTTTTTCTCAG
CTTTTTATAACTGTTGTGGTTCCTCTCATTATTGGACAGATTGTCCGAAGATACATCAAG
GATTGGCTTGAAAGAAAGAAACTGCCTTTTGGTGCTATCAGCAGCAGTAGGCTCCTCATG
ATCATCTACACGACATTCTGTGACACGTTCTCTAACCCAAATATTGACCTGGATAAATTC
AGCCTTATTCTCATACTGTTCATAATATTTTCTATTCAGCTGAGTTTTATGCTTTTAACC
TTCATCTTTTCAACCAGGAATAATTCGGGTTTCACACCAGCAGACACCGTGGCTATCATT
TTCTGTTCTACACACAAATCCCTCACGTTAGGGATTCCAATGCTGAAGATAGTGTTTGCA
GGCCAAGAGCACCTCCCGTTGATATCTGTCCCCCTGCTCATCTACCATCCGGTTCAGATC
CTGCTGGGCAGTGTGCTGGTGCCAACAATAAAGTCTTGGATGGTGTCAAGGCAGAAGAAA
CTGCTCCAAACCAGGGGACCACTGGCTAACTTAGAATAATCCAGAAGACTTGGAATATTT
ATCTATCCCACTTGACCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAAIFNSAFGSFLGIVITPLLLLLFLGSSSSVPFTSIFSQLFMTVVVPLIIGQIVRRYIKDWLERKKPPFGAISSSVLLMIIYTTFCDTFSNPNIDLDKF
AAA.FNSAFGSFLGIVITPLLLLLFLGSSSSVPFTSIFSQLF.TVVVPLIIGQIVRRYIKDWLERKK.PFGAISSS.LLMIIYTTFCDTFSNPNIDLDKF
Retrocopy
AAALFNSAFGSFLGIVITPLLLLLFLGSSSSVPFTSIFSQLFITVVVPLIIGQIVRRYIKDWLERKKLPFGAISSSRLLMIIYTTFCDTFSNPNIDLDKF


Parental protein
SLILILFIIFSIKICPMYY-FIVRSRNNSGFTPADTVAIIFCSTHKSLTLGIPMLKIVFAGHEHLSLISVPLLIYHPVQILLGSVLVPTIKSWMVSRQKK
SLILILFIIFSI....M...FI...RNNSGFTPADTVAIIFCSTHKSLTLGIPMLKIVFAG.EHL.LISVPLLIYHPVQILLGSVLVPTIKSWMVSRQKK
Retrocopy
SLILILFIIFSIQLSFMLLTFIFSTRNNSGFTPADTVAIIFCSTHKSLTLGIPMLKIVFAGQEHLPLISVPLLIYHPVQILLGSVLVPTIKSWMVSRQKK


Parental protein
LLQTRGPLANL-NNPEDLEYLSIPLDH
LLQTRGPLANL.NNPEDLEYLSIPLDH
Retrocopy
LLQTRGPLANL\NNPEDLEYLSIPLDH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide