RetrogeneDB ID:
retro_ecab_796
Organism:
Horse ( Equus_caballus )
Location:
4:93875676-93875903 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.44 %
Coverage:
71.03 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
MED10
Parental gene aliases:
No gene alias available
Parental gene description:
mediator complex subunit 10 [Source:HGNC Symbol;Acc:28760]

Genomic region (view in browser)





>retro_ecab_796
CAGAAGCTCAATTGTACTGCTACTGGTTTACAGGATACCAATAAATACAAACAGCAGCTT
CGTAATATTACTCTACCTTTGGAAGTTTTTAGTATACAGATCGAGGTTGAAATTCCAAAC
CCTGTATGGTAGAGTGCTTAGGGAGGTCTCTAGCCAGAAGTGAACAAGTTAAAGGCAAAA
TTGACACAATAAAGAAATTTAAAAGCCTTTTCCTTCAACAACTGACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RELNFIVTGLQDIDKCRQQLHDITVPLEVFE-YIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELS
..LN...TGLQD..K..QQL..IT.PLEVF..Y.D.G.N......ECL.R.LA..EQVKGKIDT.KKFKSL..Q.L.
Retrocopy
QKLNCTATGLQDTNKYKQQLRNITLPLEVFS/YTDRG*NSKPCMVECLGRSLARSEQVKGKIDTIKKFKSLFLQQLT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide