RetrogeneDB ID:
retro_ecab_798
Organism:
Horse ( Equus_caballus )
Location:
4:95205214-95206117 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.01 %
Coverage:
53.94 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
TCP1
Parental gene aliases:
No gene alias available
Parental gene description:
t-complex 1 [Source:HGNC Symbol;Acc:11655]

Genomic region (view in browser)





>retro_ecab_798
ACAGACCCTGAAAAACTGCATCAGATTAGACAGAGAAAATCAGATATCACCAAGGGGCAA
ATCCAGAAGATTCTGGAAACTGATGTCAATGTTATTCTAACCACTGATGGAATTGACAAT
ATGTGTCTGAACCATTTTGCAGAGACTGGCACTATAGCAGTTAGAAGAATTTTAAAAAGG
GACCTTAAATGCATTGGTAAAGATTCTGGAGTAATTACTCTGTCAACTCTGGCCAGTTTG
GAAGGCAAAGAAACTTTTGAAGCTTTAATGTTAAGACAAGCAGAAGAGGTGGTACAGGAG
AGAATTCATGATGATGAAGTGATCTTCATCAAAAACACTAAAGCCCATACATCTGCATCA
GCTATCTTTTGTGAAGTGAATGATTTCATGTGTGGTGAGATGGAGTGCTCTTTACAAGAT
GTTCTTTGTGTGGTGAAGAGAGTTTTGGCATCAAAAATCTGTGGTTCCAGGTAGGGGTGC
TGTAGAAGCAGCCTTGTCCATGTATCTTGAAAACTATGCAGTCAGCACAGGGTCCCCGGA
ATAGCTTGCTATTGCAGAGTTGCAAGCTCTCTTCTTGCTATTCCTAATGCATTGGCAGTT
TATGCTTCCCGAGACTCCATAGATCTGGCTGCAAAGTTAAGAGCTTTTCATAATGAGGTT
CAAGTTAACCAAGAATGCAAAAATCTAAAATGGATTAGTCTTGATTTGGTCAATGGAAAA
CCTTGAGACAACAAACAAGCAGAGGTGTGTGAACCAATCATAGTTAAAATTAAGAGTTCG
AAATTTGCAGTGGAGGTTGCAATTACTGTTCTTCAAATTGATATTATTAAATTACACCTA
GAAAGAAAAAAAGATGATAAGTATGGAGGTTATGAAGATACTGTTCACTAGGGAGCCCTT
AAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVRRVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQE
TDPEKL.QIRQR.SDITK..IQKIL.T..NVILTT.GID.MCL..F.ETG..AVRR.LKRDLK.I.K.SG...LSTLA.LEG.ETFEA.ML.QAEEVVQE
Retrocopy
TDPEKLHQIRQRKSDITKGQIQKILETDVNVILTTDGIDNMCLNHFAETGTIAVRRILKRDLKCIGKDSGVITLSTLASLEGKETFEALMLRQAEEVVQE


Parental protein
RICDDELILIKNTKARTSASVILRGANDFMCDEMERSLHDALCVVKRVLES-KSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEF-ARSLLVIPNTL
RI.DDE.I.IKNTKA.TSAS.I....NDFMC.EME.SL.D.LCVVKRVL.S.KSVVPG.GAVEAALS.YLENYA.S.GS.E.LAIAE..A.SLL.IPN.L
Retrocopy
RIHDDEVIFIKNTKAHTSASAIFCEVNDFMCGEMECSLQDVLCVVKRVLAS\KSVVPGRGAVEAALSMYLENYAVSTGSPE*LAIAEL/ASSLLAIPNAL


Parental protein
AVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPE-SKDDKHGGYEDAVHS
AV.A..DS.DL.AKLRAFHNE.QVN.E.KNLKWI.LDLVNGKP.DNKQA.V.EP.IVK.KS.KFA.E.AIT.L.I.D.IKLH.E..KDDK.GGYED.VH.
Retrocopy
AVYASRDSIDLAAKLRAFHNEVQVNQECKNLKWISLDLVNGKP*DNKQAEVCEPIIVKIKSSKFAVEVAITVLQI-DIIKLHLERKKDDKYGGYEDTVH*


Parental protein
GALD
GAL.
Retrocopy
GALN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide