RetrogeneDB ID:
retro_ecab_799
Organism:
Horse ( Equus_caballus )
Location:
4:237564-238072 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.2 %
Coverage:
60.42 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
VDAC3
Parental gene aliases:
No gene alias available
Parental gene description:
voltage-dependent anion channel 3 [Source:HGNC Symbol;Acc:12674]

Genomic region (view in browser)





>retro_ecab_799
AAACACAGAAAATTAAAGGCTTCCCATAAACAGGATTGTGCCAGTCTTGGCAATAATGCT
GATAGAGATTTTTCTAGAACAACAGTTTATGGATGAGCTCTGCTGGCCTTTGAACATTGG
CTCGATGGCCATCAGAGCAGTTCTGATACAGGCAAATCCAAACTGTCGGAGAATGTCACC
CTGGGTCGCAAATCTTCAGACTTTTACATGAAGATTCATGTGAATGATGGCACTGAATTT
GGAAATTTTTTCTATAAGAAGGTTAATGAGAAAATTGAAGCTTCAGATAAATCTTGTTTG
GACAGCTGGTTAGTGACAACACCCAATTTTGCATGACTGCCAAATACAAACTGGATTGTG
GAACTTCTGTTCTTGGTAAATTACTAATTACCAGCCTGAATGCACAAGGGTCTACTCAGA
CCCTTCAACCAAGAGTTGGATCGATCCTGGCAGCTTAAAATGATGAGAACTTCAGTCCAA
AGGTCATAAGGTTGAGCTGAGATTTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSGKLKASYKRDCFSLGSNVDIDFSGPTIYGWAVLAFEGWLAGYQMSFDTAKSKLSQNNFALGYKAADFQLHTHVNDGTEFGGSIYQKVNEKIETS-INL
K..KLKAS.K.DC.SLG.N.D.DFS..T.YG.A.LAFE.WL.G.Q.S.DT.KSKLS.N...LG.K..DF....HVNDGTEFG...Y.KVNEKIE.S.INL
Retrocopy
KHRKLKASHKQDCASLGNNADRDFSRTTVYG*ALLAFEHWLDGHQSSSDTGKSKLSEN-VTLGRKSSDFYMKIHVNDGTEFGNFFYKKVNEKIEAS\INL


Parental protein
AWTAG-SNNTRFGIAAKYKLDCRTSLSAKVNNASLIGLGYTQTLRPGVKLTLSALIDGKNFN-AGGHKVGLGFE
.WTAG.S.NT.F...AKYKLDC.TS...K....SL...G.TQTL.P.V...L.A..D..NF....GHKV.L.FE
Retrocopy
VWTAG\SDNTQFCMTAKYKLDCGTSVLGKLLITSLNAQGSTQTLQPRVGSILAA*ND-ENFS/SKGHKVELRFE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide