RetrogeneDB ID:
retro_ecab_8
Organism:
Horse ( Equus_caballus )
Location:
1:96257113-96258370 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
99.28 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_8
TTAAGAAGAAACTTCCTGACTTGCCTGTCTTCTTGGAAAGCTCCTCCTCGCATCCCCAGA
TCTTCCCAGTCAGAAGCTCTACTCAATATAGCAAATAATGGGCTCCCCTACGCCCCACTG
CAAACATTCACAGAGGAGGAGACGATGCTAAAGAGGACAGTTGAAAGATTTGCCCAGGAA
CAAATTGCTCCTTTGGTTTTAACAATGGATGAAAATTCAAAAGTGGAAAAATCAGTAATA
CAAGGATTATTTCAACATGGGTTGATGGGAATTGAAATTGACACCATCTATGGAGGAACG
GGAGCTTCGTTTTTCTCCTCTGTCCTAGCGATAGAGGAATTAGCCAAAGTTGATGCATCT
GTGGCTTTGTTTTGTGACCTCCAGAACACACTAATTAACACACTGATCATGAAACATGGA
ACAGAAGAACAAAAGGCTACCTATTTGACCAAGCTAGCTACAGAAGAAATAGGAAGTTTC
TGCCTTTCAGAGGCTGGAGCAGGAAGCGATTCATTTAGTCTGAAGACCAGAGCTGATAAA
AAGGGAGATTATTTTGTCATCAACGGGTCAAAGATGTGGATCAGCCATGCTGAGTACGCA
GGGCTCTTCCTGGTGATGGCAAACGTCGACCCTACCAGGGGGTATAAAGGAATCACCTGC
TTCTTAGTAGATCGTGGTACTGAAGGGCTTCATATAGGGAAACCAGAAAACAAATTGGGA
CTCAGAGCTTCTTGCACCTGTCCATTAACATTTGACAATGTCAAGGTTCCAGAAGCCAAT
GTCCTGGGACAAATTGGACATGGTTACAAGTATGCCATAGGGATGCTTAATAAAGGTAGA
GTAGGAATTGCTGCACAGATGCTGGGACTGGCTCAAGGATGTTTTGACTACACTATTCCA
TATATTAAAGAAAGGGTACAATTTGGCACCAGATTATTTGACTTCCAGGGGCTCCAACAC
CAAGTGGCTCACGTGGCCACTCAGCTGGAAGCTGCAAGATTACTAACATACAACACAGCC
AGGCTTGCGGAAGCTGGAAGGCCGTTCATAAAAGAAGCATCTATGGCCAAATACTATGCA
TCAGAGATCGCGGGACGAACAACTAGTAAATGTATCGACTGGATGGGAGGAGCGGGCTAC
GTCAAAGCTTACCCTGTGGAAAAGTACTTCCGAAATGCCAAGATTGGTACAATATATGAA
GGAACTTCAAATATTCAGCTGAACACCATTGCCAAGCACATCGATGCAGAATACTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LRRNFLTCLSSWKAPPRIPRSSQSEALLNIANNGLPYAPLQTFTEEEMMLKRTVERFAQEQIAPLVLTMDENSKVEKSVIQGLFQHGLMGIEIDTIYGGT
LRRNFLTCLSSWKAPPRIPRSSQSEALLNIANNGLPYAPLQTFTEEE.MLKRTVERFAQEQIAPLVLTMDENSKVEKSVIQGLFQHGLMGIEIDTIYGGT
Retrocopy
LRRNFLTCLSSWKAPPRIPRSSQSEALLNIANNGLPYAPLQTFTEEETMLKRTVERFAQEQIAPLVLTMDENSKVEKSVIQGLFQHGLMGIEIDTIYGGT


Parental protein
GASFFSSVLAIEELAKVDASVALFCDLQNTLINTLIMKHGTEEQKATYLTKLATEEIGSFCLSEAGAGSDSFSLKTRADKKGDYFVINGSKMWISHAEYA
GASFFSSVLAIEELAKVDASVALFCDLQNTLINTLIMKHGTEEQKATYLTKLATEEIGSFCLSEAGAGSDSFSLKTRADKKGDYFVINGSKMWISHAEYA
Retrocopy
GASFFSSVLAIEELAKVDASVALFCDLQNTLINTLIMKHGTEEQKATYLTKLATEEIGSFCLSEAGAGSDSFSLKTRADKKGDYFVINGSKMWISHAEYA


Parental protein
GLFLVMANVDPTRGYKGITCFLVDRGTEGLHIGKPENKLGLRASCTCPLTFDNVKVPEANVLGQIGHGYKYAIGMLNKGRVGIAAQMLGLAQGCFDYTIP
GLFLVMANVDPTRGYKGITCFLVDRGTEGLHIGKPENKLGLRASCTCPLTFDNVKVPEANVLGQIGHGYKYAIGMLNKGRVGIAAQMLGLAQGCFDYTIP
Retrocopy
GLFLVMANVDPTRGYKGITCFLVDRGTEGLHIGKPENKLGLRASCTCPLTFDNVKVPEANVLGQIGHGYKYAIGMLNKGRVGIAAQMLGLAQGCFDYTIP


Parental protein
YIKERVQFGTRLFDFQGLQHQVAHVATQLEAARLLTYNAARLAEAGRPFIKEASMAKYYASEIAGRTTSKCIDWMGGAGYVKAYPVEKYFRDAKIGTIYE
YIKERVQFGTRLFDFQGLQHQVAHVATQLEAARLLTYN.ARLAEAGRPFIKEASMAKYYASEIAGRTTSKCIDWMGGAGYVKAYPVEKYFR.AKIGTIYE
Retrocopy
YIKERVQFGTRLFDFQGLQHQVAHVATQLEAARLLTYNTARLAEAGRPFIKEASMAKYYASEIAGRTTSKCIDWMGGAGYVKAYPVEKYFRNAKIGTIYE


Parental protein
GTSNIQLNTIAKHIDAEY
GTSNIQLNTIAKHIDAEY
Retrocopy
GTSNIQLNTIAKHIDAEY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide